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More robust parsing of capacities and allowing constants in GSPN properties

tempestpy_adaptions
TimQu 6 years ago
parent
c124ebcc93
commit
4861b8d4b4
9 changed files with 119 additions and 71 deletions
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  1. 28
      src/storm-gspn-cli/storm-gspn.cpp
  2. 34
      src/storm-gspn/api/storm-gspn.cpp
  3. 6
      src/storm-gspn/api/storm-gspn.h
  4. 69
      src/storm-gspn/parser/GreatSpnEditorProjectParser.cpp
  5. 7
      src/storm-gspn/parser/GreatSpnEditorProjectParser.h
  6. 18
      src/storm-gspn/storage/gspn/GSPN.cpp
  7. 11
      src/storm-gspn/storage/gspn/GSPN.h
  8. 13
      src/storm-gspn/storage/gspn/GspnBuilder.cpp
  9. 4
      src/storm-gspn/storage/gspn/GspnBuilder.h

28
src/storm-gspn-cli/storm-gspn.cpp
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@ -5,9 +5,6 @@
#include "storm-gspn/builder/JaniGSPNBuilder.h"
#include "storm-gspn/api/storm-gspn.h"
#include "storm/exceptions/BaseException.h"
#include "storm/exceptions/WrongFormatException.h"
#include "storm/utility/macros.h"
#include "storm/utility/initialize.h"
@ -57,25 +54,6 @@ void initializeSettings() {
}
std::unordered_map<std::string, uint64_t> parseCapacitiesList(std::string const& filename) {
std::unordered_map<std::string, uint64_t> map;
std::ifstream stream;
storm::utility::openFile(filename, stream);
std::string line;
while ( std::getline(stream, line) ) {
std::vector<std::string> strs;
boost::split(strs, line, boost::is_any_of("\t "));
STORM_LOG_THROW(strs.size() == 2, storm::exceptions::WrongFormatException, "Expect key value pairs");
std::cout << std::stoll(strs[1]) << std::endl;
map[strs[0]] = std::stoll(strs[1]);
}
storm::utility::closeFile(stream);
return map;
}
int main(const int argc, const char **argv) {
try {
storm::utility::setUp();
@ -109,13 +87,14 @@ int main(const int argc, const char **argv) {
boost::optional<std::set<std::string>> propertyFilter;
storm::parser::FormulaParser formulaParser(gspn->getExpressionManager());
std::vector<storm::jani::Property> properties = storm::api::parseProperties(formulaParser, formulaString, propertyFilter);
properties = storm::api::substituteConstantsInProperties(properties, gspn->getConstantsSubstitution());
if (!gspn->isValid()) {
STORM_LOG_ERROR("The gspn is not valid.");
}
if(gspnSettings.isCapacitiesFileSet()) {
auto capacities = parseCapacitiesList(gspnSettings.getCapacitiesFilename());
auto capacities = storm::api::parseCapacitiesList(gspnSettings.getCapacitiesFilename(), *gspn);
gspn->setCapacities(capacities);
} else if (gspnSettings.isCapacitySet()) {
uint64_t capacity = gspnSettings.getCapacity();
@ -131,7 +110,6 @@ int main(const int argc, const char **argv) {
delete gspn;
return 0;
//
// // construct ma
// auto builder = storm::builder::ExplicitGspnModelBuilder<>();
// auto ma = builder.translateGspn(gspn, formula);

34
src/storm-gspn/api/storm-gspn.cpp
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@ -5,7 +5,8 @@
#include "storm-gspn/settings/modules/GSPNExportSettings.h"
#include "storm-conv/settings/modules/JaniExportSettings.h"
#include "storm-conv/api/storm-conv.h"
#include "storm-parsers/parser/ExpressionParser.h"
#include "storm/exceptions/WrongFormatException.h"
namespace storm {
namespace api {
@ -75,5 +76,36 @@ namespace storm {
delete model;
}
}
std::unordered_map<std::string, uint64_t> parseCapacitiesList(std::string const& filename, storm::gspn::GSPN const& gspn) {
storm::parser::ExpressionParser expressionParser(*gspn.getExpressionManager());
std::unordered_map<std::string, storm::expressions::Expression> identifierMapping;
for (auto const& var : gspn.getExpressionManager()->getVariables()) {
identifierMapping.emplace(var.getName(), var.getExpression());
}
expressionParser.setIdentifierMapping(identifierMapping);
expressionParser.setAcceptDoubleLiterals(false);
std::unordered_map<std::string, uint64_t> map;
std::ifstream stream;
storm::utility::openFile(filename, stream);
std::string line;
while ( std::getline(stream, line) ) {
std::vector<std::string> strs;
boost::split(strs, line, boost::is_any_of("\t "));
STORM_LOG_THROW(strs.size() == 2, storm::exceptions::WrongFormatException, "Expect key value pairs");
storm::expressions::Expression expr = expressionParser.parseFromString(strs[1]);
if (!gspn.getConstantsSubstitution().empty()) {
expr = expr.substitute(gspn.getConstantsSubstitution());
}
STORM_LOG_THROW(!expr.containsVariables(), storm::exceptions::WrongFormatException, "The capacity expression '" << strs[1] << "' still contains undefined constants.");
map[strs[0]] = expr.evaluateAsInt();
}
storm::utility::closeFile(stream);
return map;
}
}
}

6
src/storm-gspn/api/storm-gspn.h
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@ -1,5 +1,7 @@
#pragma once
#include <unordered_map>
#include "storm/storage/jani/Model.h"
#include "storm-gspn/storage/gspn/GSPN.h"
#include "storm-gspn/builder/JaniGSPNBuilder.h"
@ -14,6 +16,8 @@ namespace storm {
void handleGSPNExportSettings(storm::gspn::GSPN const& gspn,
std::function<std::vector<storm::jani::Property>(storm::builder::JaniGSPNBuilder const&)> const& janiProperyGetter = [](storm::builder::JaniGSPNBuilder const&) { return std::vector<storm::jani::Property>(); });
std::unordered_map<std::string, uint64_t> parseCapacitiesList(std::string const& filename, storm::gspn::GSPN const& gspn);
}
}

69
src/storm-gspn/parser/GreatSpnEditorProjectParser.cpp
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@ -23,7 +23,7 @@ namespace {
namespace storm {
namespace parser {
GreatSpnEditorProjectParser::GreatSpnEditorProjectParser(std::string const& constantDefinitionString) : manager(std::make_shared<storm::expressions::ExpressionManager>()), expressionParser(*manager) {
GreatSpnEditorProjectParser::GreatSpnEditorProjectParser(std::string const& constantDefinitionString) : manager(std::make_shared<storm::expressions::ExpressionManager>()) {
if (constantDefinitionString != "") {
std::vector<std::string> constDefs;
boost::split( constDefs, constantDefinitionString, boost::is_any_of(","));
@ -39,7 +39,7 @@ namespace storm {
storm::gspn::GSPN* GreatSpnEditorProjectParser::parse(xercesc::DOMElement const* elementRoot) {
if (storm::adapters::XMLtoString(elementRoot->getTagName()) == "project") {
traverseProjectElement(elementRoot);
return builder.buildGspn();
return builder.buildGspn(manager, constantsSubstitution);
} else {
// If the top-level node is not a "pnml" or "" node, then throw an exception.
STORM_LOG_THROW(false, storm::exceptions::UnexpectedException, "Failed to identify the root element.\n");
@ -130,17 +130,23 @@ namespace storm {
// traverse children
// First pass: find constant definitions
constantsSubstitution.clear();
expressionParser = std::make_shared<storm::parser::ExpressionParser>(*manager);
std::unordered_map<std::string, storm::expressions::Expression> identifierMapping;
expressionParser.setIdentifierMapping(identifierMapping);
expressionParser->setIdentifierMapping(identifierMapping);
for (uint_fast64_t i = 0; i < node->getChildNodes()->getLength(); ++i) {
auto child = node->getChildNodes()->item(i);
auto name = storm::adapters::getName(child);
if (name.compare("constant") == 0 || name.compare("template") == 0) {
traverseConstantOrTemplateElement(child, identifierMapping);
traverseConstantOrTemplateElement(child);
}
}
expressionParser.setIdentifierMapping(identifierMapping);
// Update the expression parser to make the newly created variables known to it
expressionParser = std::make_shared<storm::parser::ExpressionParser>(*manager);
for (auto const& var : manager->getVariables()) {
identifierMapping.emplace(var.getName(), var.getExpression());
}
expressionParser->setIdentifierMapping(identifierMapping);
// Second pass: traverse other children
for (uint_fast64_t i = 0; i < node->getChildNodes()->getLength(); ++i) {
auto child = node->getChildNodes()->item(i);
@ -162,7 +168,7 @@ namespace storm {
}
}
void GreatSpnEditorProjectParser::traverseConstantOrTemplateElement(xercesc::DOMNode const* const node, std::unordered_map<std::string, storm::expressions::Expression>& identifierMapping) {
void GreatSpnEditorProjectParser::traverseConstantOrTemplateElement(xercesc::DOMNode const* const node) {
std::string identifier;
storm::expressions::Type type;
std::string valueStr = "";
@ -193,24 +199,24 @@ namespace storm {
}
}
STORM_LOG_THROW(identifierMapping.count(identifier) == 0, storm::exceptions::NotSupportedException, "Multiple definitions of constant '" << identifier << "' were found.");
storm::expressions::Expression valueExpression;
STORM_LOG_THROW(!manager->hasVariable(identifier), storm::exceptions::NotSupportedException, "Multiple definitions of constant '" << identifier << "' were found.");
if (valueStr == "") {
auto constDef = constantDefinitions.find(identifier);
STORM_LOG_THROW(constDef != constantDefinitions.end(), storm::exceptions::NotSupportedException, "Constant '" << identifier << "' has no value defined.");
valueStr = constDef->second;
}
storm::expressions::Variable var;
if (type.isRationalType()) {
expressionParser.setAcceptDoubleLiterals(true);
valueExpression = manager->rational(expressionParser.parseFromString(valueStr).evaluateAsRational());
var = manager->declareRationalVariable(identifier);
expressionParser->setAcceptDoubleLiterals(true);
} else if (type.isIntegerType()) {
expressionParser.setAcceptDoubleLiterals(false);
valueExpression = manager->integer(expressionParser.parseFromString(valueStr).evaluateAsInt());
var = manager->declareIntegerVariable(identifier);
expressionParser->setAcceptDoubleLiterals(false);
} else {
STORM_LOG_THROW(false, storm::exceptions::NotSupportedException, "Unknown type of constant" << type << ".");
}
identifierMapping.emplace(identifier, valueExpression);
constantsSubstitution.emplace(var, expressionParser->parseFromString(valueStr));
// traverse children
for (uint_fast64_t i = 0; i < node->getChildNodes()->getLength(); ++i) {
auto child = node->getChildNodes()->item(i);
@ -277,8 +283,7 @@ namespace storm {
if (name.compare("name") == 0) {
placeName = storm::adapters::XMLtoString(attr->getNodeValue());
} else if (name.compare("marking") == 0) {
expressionParser.setAcceptDoubleLiterals(false);
initialTokens = expressionParser.parseFromString(storm::adapters::XMLtoString(attr->getNodeValue())).evaluateAsInt();
initialTokens = parseInt(storm::adapters::XMLtoString(attr->getNodeValue()));
} else if (ignorePlaceAttribute(name)) {
// ignore node
} else {
@ -338,14 +343,11 @@ namespace storm {
STORM_PRINT_AND_LOG("unknown transition type: " << storm::adapters::XMLtoString(attr->getNodeValue()));
}
} else if(name.compare("delay") == 0) {
expressionParser.setAcceptDoubleLiterals(true);
rate = expressionParser.parseFromString(storm::adapters::XMLtoString(attr->getNodeValue())).evaluateAsDouble();
rate = parseReal(storm::adapters::XMLtoString(attr->getNodeValue()));
} else if(name.compare("weight") == 0) {
expressionParser.setAcceptDoubleLiterals(true);
weight = expressionParser.parseFromString(storm::adapters::XMLtoString(attr->getNodeValue())).evaluateAsDouble();
weight = parseReal(storm::adapters::XMLtoString(attr->getNodeValue()));
} else if(name.compare("priority") == 0) {
expressionParser.setAcceptDoubleLiterals(false);
priority = expressionParser.parseFromString(storm::adapters::XMLtoString(attr->getNodeValue())).evaluateAsInt();
priority = parseInt(storm::adapters::XMLtoString(attr->getNodeValue()));
} else if (name.compare("nservers") == 0) {
std::string nservers = storm::adapters::XMLtoString(attr->getNodeValue());
if (nservers == "Single") {
@ -353,8 +355,7 @@ namespace storm {
} else if (nservers == "Infinite") {
// Ignore this case as we assume infinite by default (similar to GreatSpn)
} else {
expressionParser.setAcceptDoubleLiterals(false);
numServers = expressionParser.parseFromString(nservers).evaluateAsInt();
numServers = parseInt(nservers);
}
} else if (ignoreTransitionAttribute(name)) {
// ignore node
@ -419,8 +420,7 @@ namespace storm {
} else if (name.compare("kind") == 0 || name.compare("type") == 0) {
kind = storm::adapters::XMLtoString(attr->getNodeValue());
} else if (name.compare("mult") == 0) {
expressionParser.setAcceptDoubleLiterals(false);
mult = expressionParser.parseFromString(storm::adapters::XMLtoString(attr->getNodeValue())).evaluateAsInt();
mult = parseInt(storm::adapters::XMLtoString(attr->getNodeValue()));
} else if (ignoreArcAttribute(name)) {
// ignore node
} else {
@ -463,6 +463,21 @@ namespace storm {
}
}
int64_t GreatSpnEditorProjectParser::parseInt(std::string str) {
expressionParser->setAcceptDoubleLiterals(false);
auto expr = expressionParser->parseFromString(str).substitute(constantsSubstitution);
STORM_LOG_ASSERT(!expr.containsVariables(), "Can not evaluate expression " << str << " as it contains undefined variables.");
return expr.evaluateAsInt();
}
double GreatSpnEditorProjectParser::parseReal(std::string str) {
expressionParser->setAcceptDoubleLiterals(true);
auto expr = expressionParser->parseFromString(str).substitute(constantsSubstitution);
STORM_LOG_ASSERT(!expr.containsVariables(), "Can not evaluate expression " << str << " as it contains undefined variables.");
return expr.evaluateAsDouble();
}
}
}
#endif

7
src/storm-gspn/parser/GreatSpnEditorProjectParser.h
View File

@ -36,17 +36,20 @@ namespace storm {
void traverseNodesElement(xercesc::DOMNode const* const node);
void traverseEdgesElement(xercesc::DOMNode const* const node);
void traverseConstantOrTemplateElement(xercesc::DOMNode const* const node, std::unordered_map<std::string, storm::expressions::Expression>& identifierMapping);
void traverseConstantOrTemplateElement(xercesc::DOMNode const* const node);
void traversePlaceElement(xercesc::DOMNode const* const node);
void traverseTransitionElement(xercesc::DOMNode const* const node);
void traverseArcElement(xercesc::DOMNode const* const node);
int64_t parseInt(std::string str);
double parseReal(std::string str);
// the constructed gspn
storm::gspn::GspnBuilder builder;
std::shared_ptr<storm::expressions::ExpressionManager> manager;
storm::parser::ExpressionParser expressionParser;
std::shared_ptr<storm::parser::ExpressionParser> expressionParser;
std::unordered_map<std::string, std::string> constantDefinitions;
std::map<storm::expressions::Variable, storm::expressions::Expression> constantsSubstitution;
};
}
}

18
src/storm-gspn/storage/gspn/GSPN.cpp
View File

@ -26,8 +26,8 @@ namespace storm {
return tId;
}
GSPN::GSPN(std::string const& name, std::vector<Place> const& places, std::vector<ImmediateTransition<WeightType>> const& itransitions, std::vector<TimedTransition<RateType>> const& ttransitions, std::vector<TransitionPartition> const& partitions, std::shared_ptr<storm::expressions::ExpressionManager> const& exprManager)
: name(name), places(places), immediateTransitions(itransitions), timedTransitions(ttransitions), partitions(partitions), exprManager(exprManager)
GSPN::GSPN(std::string const& name, std::vector<Place> const& places, std::vector<ImmediateTransition<WeightType>> const& itransitions, std::vector<TimedTransition<RateType>> const& ttransitions, std::vector<TransitionPartition> const& partitions, std::shared_ptr<storm::expressions::ExpressionManager> const& exprManager, std::map<storm::expressions::Variable, storm::expressions::Expression> const& constantsSubstitution)
: name(name), places(places), immediateTransitions(itransitions), timedTransitions(ttransitions), partitions(partitions), exprManager(exprManager), constantsSubstitution(constantsSubstitution)
{
}
@ -134,12 +134,16 @@ namespace storm {
return getImmediateTransition(id);
}
std::shared_ptr<storm::expressions::ExpressionManager> const& GSPN::getExpressionManager() const {
return exprManager;
}
std::map<storm::expressions::Variable, storm::expressions::Expression> const& GSPN::getConstantsSubstitution() const {
return constantsSubstitution;
}
std::shared_ptr<storm::expressions::ExpressionManager> const& GSPN::getExpressionManager() const {
return exprManager;
}
void GSPN::setCapacities(std::unordered_map<std::string, uint64_t> const& mapping) {
void GSPN::setCapacities(std::unordered_map<std::string, uint64_t> const& mapping) {
for(auto const& entry : mapping) {
storm::gspn::Place* place = getPlace(entry.first);
STORM_LOG_THROW(place != nullptr, storm::exceptions::InvalidArgumentException, "No place with name " << entry.first);

11
src/storm-gspn/storage/gspn/GSPN.h
View File

@ -32,7 +32,7 @@ namespace storm {
GSPN(std::string const& name, std::vector<Place> const& places, std::vector<ImmediateTransition<WeightType>> const& itransitions,
std::vector<TimedTransition<RateType>> const& ttransitions, std::vector<TransitionPartition> const& partitions, std::shared_ptr<storm::expressions::ExpressionManager> const& exprManager);
std::vector<TimedTransition<RateType>> const& ttransitions, std::vector<TransitionPartition> const& partitions, std::shared_ptr<storm::expressions::ExpressionManager> const& exprManager, std::map<storm::expressions::Variable, storm::expressions::Expression> const& constantsSubstitution = std::map<storm::expressions::Variable, storm::expressions::Expression>());
/*!
* Returns the number of places in this gspn.
@ -145,8 +145,13 @@ namespace storm {
*/
std::shared_ptr<storm::expressions::ExpressionManager> const& getExpressionManager() const;
/*!
* Gets an assignment of occurring constants of the GSPN to their value
*/
std::map<storm::expressions::Variable, storm::expressions::Expression> const& getConstantsSubstitution() const;
/**
* Set Capacities according to name->capacity map.
* Set Capacities of places according to name->capacity map.
*/
void setCapacities(std::unordered_map<std::string, uint64_t> const& mapping);
@ -217,6 +222,8 @@ namespace storm {
std::vector<storm::gspn::TransitionPartition> partitions;
std::shared_ptr<storm::expressions::ExpressionManager> exprManager;
std::map<storm::expressions::Variable, storm::expressions::Expression> constantsSubstitution;
// Layout information
mutable std::map<uint64_t, LayoutInfo> placeLayout;

13
src/storm-gspn/storage/gspn/GspnBuilder.cpp
View File

@ -171,8 +171,13 @@ namespace storm {
storm::gspn::GSPN* GspnBuilder::buildGspn() const {
std::shared_ptr<storm::expressions::ExpressionManager> exprManager(new storm::expressions::ExpressionManager());
storm::gspn::GSPN* GspnBuilder::buildGspn(std::shared_ptr<storm::expressions::ExpressionManager> const& exprManager, std::map<storm::expressions::Variable, storm::expressions::Expression> const& constantsSubstitution) const {
std::shared_ptr<storm::expressions::ExpressionManager> actualExprManager;
if (exprManager) {
actualExprManager = exprManager;
} else {
actualExprManager = std::make_shared<storm::expressions::ExpressionManager>();
}
std::vector<TransitionPartition> orderedPartitions;
for(auto const& priorityPartitions : partitions) {
@ -188,10 +193,10 @@ namespace storm {
}
std::reverse(orderedPartitions.begin(), orderedPartitions.end());
for(auto const& placeEntry : placeNames) {
exprManager->declareIntegerVariable(placeEntry.first, false);
actualExprManager->declareIntegerVariable(placeEntry.first, false);
}
GSPN* result = new GSPN(gspnName, places, immediateTransitions, timedTransitions, orderedPartitions, exprManager);
GSPN* result = new GSPN(gspnName, places, immediateTransitions, timedTransitions, orderedPartitions, actualExprManager, constantsSubstitution);
result->setTransitionLayoutInfo(transitionLayout);
result->setPlaceLayoutInfo(placeLayout);
return result;

4
src/storm-gspn/storage/gspn/GspnBuilder.h
View File

@ -100,10 +100,10 @@ namespace storm {
/**
*
* @param exprManager The expression manager that will be associated with the new gspn. If this is nullptr, a new expressionmanager will be created.
* @return The gspn which is constructed by the builder.
*/
storm::gspn::GSPN* buildGspn() const;
storm::gspn::GSPN* buildGspn(std::shared_ptr<storm::expressions::ExpressionManager> const& exprManager = nullptr, std::map<storm::expressions::Variable, storm::expressions::Expression> const& constantsSubstitution = std::map<storm::expressions::Variable, storm::expressions::Expression>()) const;
private:
bool isImmediateTransitionId(uint64_t) const;
bool isTimedTransitionId(uint64_t) const;

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