Merge branch 'master' of https://sselab.de/lab9/private/git/MRMC

CMakeLists.txt

@@ -7,9 +7,13 @@ set (MRMC_CPP_VERSION_MAJOR 1)
 set (MRMC_CPP_VERSION_MINOR 0)
  
 #Configurations for GCC
-if(CMAKE_COMPILER_IS_GNUCC)
+if(CMAKE_COMPILER_IS_GNUCC) 
+        
+    #Using C++11        
+    set (CMAKE_CXX_FLAGS "-std=c++0x")
+    
     #Debug symbols
-    set (CMAKE_CXX_FLAGS "-g")
+    set (CMAKE_CXX_FLAGS_DEBUG "-g")
 endif()
  
 # configure a header file to pass some of the CMake settings
@@ -60,7 +64,7 @@ endif()
 
 message(STATUS "GTEST Include Dir is: ${GTEST_INCLUDE_DIR}")
 #message(STATUS "CMAKE_MODULE_PATH = ${CMAKE_MODULE_PATH}")
-list(APPEND CMAKE_MODULE_PATH ${PROJECT_SOURCE_DIR})
+list(APPEND CMAKE_MODULE_PATH "${PROJECT_SOURCE_DIR}")
 #list(APPEND CMAKE_MODULE_PATH ${PROJECT_SOURCE_DIR}/resources/3rdparty/gtest-1.6.0)
 #list(APPEND CMAKE_MODULE_PATH ${PROJECT_SOURCE_DIR}/resources/3rdparty/pantheios-1.0.1-beta214)
 #list(APPEND CMAKE_MODULE_PATH ${PROJECT_SOURCE_DIR}/resources/3rdparty/gteststlsoft-1.9.116)
@@ -111,15 +115,14 @@ if(Boost_FOUND)
 	link_directories(${Boost_LIBRARY_DIRS})
 endif(Boost_FOUND)
 
-list(APPEND CMAKE_MODULE_PATH ${PROJECT_SOURCE_DIR}/resources/3rdParty/eigen/cmake)
+list(APPEND CMAKE_MODULE_PATH "${PROJECT_SOURCE_DIR}/resources/3rdparty/eigen/cmake/")
 
-set(EIGEN3_INCLUDE_DIR ${PROJECT_SOURCE_DIR}/resources/3rdParty/eigen)
+set(EIGEN3_INCLUDE_DIR ${PROJECT_SOURCE_DIR}/resources/3rdparty/eigen)
 
 find_package(Eigen3 REQUIRED)
 
 if (EIGEN3_FOUND)
 	include_directories(${EIGEN3_INCLUDE_DIR})
-	message(STATUS "FounD Eigen3, Include Path ${EIGEN3_INCLUDE_DIR}")
 endif()
 
 # must be created AFTER Boost was added because of LINK_DIRECTORIES

src/dtmc/atomic_proposition.h

@@ -25,21 +25,19 @@ namespace dtmc {
 class AtomicProposition {
  public:
 
-   /*! Default Constructor
-    * Creates an uninitialized object
-    * Useful for array construction, afterwards, the initialize function has to be called.
-    */
-	AtomicProposition() {
-
-	}
-
 	//! Constructor
 	 /*!
 		\param nodeCount Amount of nodes that the DTMC has to label
 	 */
 	AtomicProposition(uint_fast32_t nodeCount) {
 	   node_array = NULL;
-	   initialize(nodeCount);
+      if (node_array == NULL) {
+          node_count = nodeCount;
+          int n = (int) std::ceil(nodeCount / 64.0);
+          node_array = new uint_fast64_t[n];
+          //Initialization with 0 is crucial!
+          memset(node_array, 0, n*sizeof(uint_fast64_t));
+      }
 	}
 
 	~AtomicProposition() {
@@ -48,17 +46,6 @@ class AtomicProposition {
 	   }
 	}
 
-	void initialize(uint_fast32_t nodeCount) {
-	   if (node_array == NULL) {
-	      node_count = nodeCount;
-	      int n = (int) std::ceil(nodeCount / 64.0);
-	      node_array = new uint_fast64_t[n];
-	      //Initialization with 0 is crucial!
-	      memset(node_array, 0, n*sizeof(uint_fast64_t));
-	   }
-
-	}
-
 	bool hasNodeLabel(uint_fast32_t nodeId) {
 		int bucket = static_cast<int>(std::floor(nodeId / 64));
 		int bucket_place = nodeId % 64;

src/dtmc/labeling.h

@@ -11,17 +11,23 @@
 #include "atomic_proposition.h"
 
 
+#define USE_STD_UNORDERED_MAP
 
 /* Map types: By default, the boost hash map is used.
- * When the macro DEFAULT_MAP is defined, the default C++ class (std::map)
+ * If the macro USE_STD_MAP is defined, the default C++ class (std::map)
  * is used instead.
  */
-#ifdef DEFAULT_MAP
-#include <map>
-#define MAP std::map
+#ifdef USE_STD_MAP
+#  include <map>
+#  define MAP std::map
 #else
-#include "boost/unordered_map.hpp"
-#define MAP boost::unordered_map
+#  ifdef USE_STD_UNORDERED_MAP
+#     include <unordered_map>
+#     define MAP std::unordered_map
+#  else
+#     include "boost/unordered_map.hpp"
+#     define MAP boost::unordered_map
+#  endif
 #endif
 
 #include <stdexcept>
@@ -33,11 +39,17 @@ namespace mrmc {
 
 namespace dtmc {
 
-
+/*! This class manages the objects of class atomic_proposition. Access is possible with the
+ * string identifiers which are used in the input.
+ */
 class labeling {
    public:
 
 
+      /*! Constructor creating an object of class labeling.
+       * @param nodeCount The number of nodes; necessary for class AtomicProposition.
+       * @param propositionCount The number of atomic propositions.
+       */
       labeling(const uint_fast32_t nodeCount,
                const uint_fast32_t propositionCount) {
          node_count = nodeCount;
@@ -60,6 +72,12 @@ class labeling {
          propositions = NULL;
       }
 
+      /*! Registers the name of a proposition.
+       * Will throw an error if more propositions are added than were initialized,
+       * or if a proposition is registered twice.
+       * @param proposition The name of the proposition to add.
+       * @return The index of the new proposition.
+       */
       uint_fast32_t addProposition(std::string proposition) {
          if (proposition_map.count(proposition) != 0) {
             throw std::out_of_range("Proposition does already exist.");
@@ -74,11 +92,17 @@ class labeling {
          return returnValue;
       }
 
+      /*! Checks whether the name of a proposition is already registered with the labeling.
+       * @return True if the proposition was added to the labeling, false otherwise.
+       */
       bool containsProposition(std::string proposition) {
          return (proposition_map.count(proposition) != 0);
       }
 
-
+      /*! Labels a node with an atomic proposition.
+       * @param proposition   The name of the proposition
+       * @param node The index of the node to label
+       */
       void addLabelToNode(std::string proposition, const uint_fast32_t node) {
          //TODO (Thomas Heinemann): Differentiate exceptions?
          if (proposition_map.count(proposition) == 0) {
@@ -90,14 +114,28 @@ class labeling {
          propositions[proposition_map[proposition]]->addLabelToNode(node);
       }
 
+      /*! Checks whether a node is labeled with a proposition.
+       * @param proposition The name of the proposition
+       * @param node The index of the node
+       * @return True if the node is labeled with the proposition, false otherwise.
+       */
       bool nodeHasProposition(std::string proposition, const uint_fast32_t node) {
          return propositions[proposition_map[proposition]]->hasNodeLabel(node);
       }
 
+      /*! Returns the number of propositions managed by this object (which was set in the initialization)
+       * @return The number of propositions.
+       */
       uint_fast32_t getNumberOfPropositions() {
 		  return proposition_count;
       }
 
+      /*! This function provides direct access to an atomic_proposition class object
+       * by its string identifier. This object manages the nodes that are labeled with the
+       * respective atomic proposition.
+       * @param proposition The name of the proposition.
+       * @return A pointer to the atomic_proposition object of the proposition.
+       */
       AtomicProposition* getProposition(std::string proposition) {
          return (propositions[proposition_map[proposition]]);
       }

src/parser/read_lab_file.cpp

@@ -35,10 +35,12 @@ namespace parser {
 
 
 /*!
- * Reads a .lab file and puts the result in a labelling structure.
+ * Reads a .lab file and puts the result in a labeling structure.
+ *
+ * Labelings created with this method have to be freed with the delete operator.
  * @param node_count the number of states.
  * @param filename   input .lab file's name.
- * @return returns a pointer to a labelling object.
+ * @return The pointer to the created labeling object.
  */
 mrmc::dtmc::labeling * read_lab_file(int node_count, const char * filename)
 {

src/parser/read_tra_file.cpp

@@ -86,8 +86,10 @@ static uint_fast32_t make_first_pass(FILE* p) {
 
 
 /*!Reads a .tra file and produces a sparse matrix representing the described Markov Chain.
- * @param *filename input .tra file's name.
- * @return a pointer to a sparse matrix.
+ *
+ * Matrices created with this method have to be freed with the delete operator.
+ * @param filename input .tra file's name.
+ * @return a pointer to the created sparse matrix.
  */
 
 sparse::StaticSparseMatrix<double> * read_tra_file(const char * filename) {