Browse Source
Added Mdp Class, Parser and support in the AutoParser.
Added Mdp Class, Parser and support in the AutoParser.
Added Test for MdpParsertempestpy_adaptions
PBerger
12 years ago
10 changed files with 593 additions and 20 deletions
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27src/models/Dtmc.h
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246src/models/Mdp.h
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6src/parser/AutoParser.cpp
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6src/parser/DtmcParser.h
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53src/parser/MdpParser.cpp
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40src/parser/MdpParser.h
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12src/storage/SparseMatrix.h
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183src/vector/dense_vector.h
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32test/parser/ParseMdpTest.cpp
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0test/storm-tests.cpp
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/* |
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* Mdp.h |
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* |
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* Created on: 14.01.2013 |
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* Author: Philipp Berger |
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*/ |
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|
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#ifndef STORM_MODELS_MDP_H_ |
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#define STORM_MODELS_MDP_H_ |
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|
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#include <ostream> |
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#include <iostream> |
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#include <memory> |
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#include <cstdlib> |
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#include "AtomicPropositionsLabeling.h" |
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#include "GraphTransitions.h" |
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#include "src/storage/SparseMatrix.h" |
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#include "src/exceptions/InvalidArgumentException.h" |
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#include "src/utility/CommandLine.h" |
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#include "src/utility/Settings.h" |
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#include "src/models/AbstractModel.h" |
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namespace storm { |
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namespace models { |
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|
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/*! |
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* This class represents a Markov Decision Process (MDP) whose states are |
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* labeled with atomic propositions. |
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*/ |
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template <class T> |
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class Mdp : public storm::models::AbstractModel { |
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public: |
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//! Constructor |
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/*! |
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* Constructs a MDP object from the given transition probability matrix and |
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* the given labeling of the states. |
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* @param probabilityMatrix The transition probability relation of the |
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* MDP given by a matrix. |
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* @param stateLabeling The labeling that assigns a set of atomic |
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* propositions to each state. |
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*/ |
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Mdp(std::shared_ptr<storm::storage::SparseMatrix<T>> probabilityMatrix, |
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std::shared_ptr<storm::models::AtomicPropositionsLabeling> stateLabeling, |
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std::shared_ptr<std::vector<T>> stateRewards = nullptr, |
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std::shared_ptr<storm::storage::SparseMatrix<T>> transitionRewardMatrix = nullptr) |
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: probabilityMatrix(probabilityMatrix), stateLabeling(stateLabeling), |
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stateRewards(stateRewards), transitionRewardMatrix(transitionRewardMatrix), |
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backwardTransitions(nullptr) { |
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if (!this->checkValidityOfProbabilityMatrix()) { |
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LOG4CPLUS_ERROR(logger, "Probability matrix is invalid."); |
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throw storm::exceptions::InvalidArgumentException() << "Probability matrix is invalid."; |
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} |
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} |
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|
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//! Copy Constructor |
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/*! |
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* Copy Constructor. Performs a deep copy of the given MDP. |
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* @param mdp A reference to the MDP that is to be copied. |
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*/ |
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Mdp(const Mdp<T> &mdp) : probabilityMatrix(mdp.probabilityMatrix), |
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stateLabeling(mdp.stateLabeling), stateRewards(mdp.stateRewards), |
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transitionRewardMatrix(mdp.transitionRewardMatrix) { |
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if (mdp.backwardTransitions != nullptr) { |
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this->backwardTransitions = new storm::models::GraphTransitions<T>(*mdp.backwardTransitions); |
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} |
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if (!this->checkValidityOfProbabilityMatrix()) { |
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LOG4CPLUS_ERROR(logger, "Probability matrix is invalid."); |
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throw storm::exceptions::InvalidArgumentException() << "Probability matrix is invalid."; |
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} |
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} |
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|
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//! Destructor |
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/*! |
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* Destructor. Frees the matrix and labeling associated with this MDP. |
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*/ |
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~Mdp() { |
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if (this->backwardTransitions != nullptr) { |
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delete this->backwardTransitions; |
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} |
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} |
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|
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/*! |
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* Returns the state space size of the MDP. |
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* @return The size of the state space of the MDP. |
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*/ |
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uint_fast64_t getNumberOfStates() const { |
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return this->probabilityMatrix->getColumnCount(); |
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} |
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|
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/*! |
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* Returns the number of (non-zero) transitions of the MDP. |
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* @return The number of (non-zero) transitions of the MDP. |
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*/ |
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uint_fast64_t getNumberOfTransitions() const { |
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return this->probabilityMatrix->getNonZeroEntryCount(); |
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} |
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|
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/*! |
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* Returns a bit vector in which exactly those bits are set to true that |
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* correspond to a state labeled with the given atomic proposition. |
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* @param ap The atomic proposition for which to get the bit vector. |
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* @return A bit vector in which exactly those bits are set to true that |
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* correspond to a state labeled with the given atomic proposition. |
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*/ |
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storm::storage::BitVector* getLabeledStates(std::string ap) const { |
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return this->stateLabeling->getAtomicProposition(ap); |
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} |
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|
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/*! |
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* Returns a pointer to the matrix representing the transition probability |
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* function. |
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* @return A pointer to the matrix representing the transition probability |
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* function. |
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*/ |
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std::shared_ptr<storm::storage::SparseMatrix<T>> getTransitionProbabilityMatrix() const { |
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return this->probabilityMatrix; |
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} |
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|
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/*! |
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* Returns a pointer to the matrix representing the transition rewards. |
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* @return A pointer to the matrix representing the transition rewards. |
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*/ |
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std::shared_ptr<storm::storage::SparseMatrix<T>> getTransitionRewardMatrix() const { |
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return this->transitionRewardMatrix; |
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} |
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|
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/*! |
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* Returns a pointer to the vector representing the state rewards. |
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* @return A pointer to the vector representing the state rewards. |
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*/ |
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std::shared_ptr<std::vector<T>> getStateRewards() const { |
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return this->stateRewards; |
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} |
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|
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/*! |
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* |
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*/ |
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std::set<std::string> const getPropositionsForState(uint_fast64_t const &state) const { |
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return stateLabeling->getPropositionsForState(state); |
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} |
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|
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/*! |
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* Retrieves a reference to the backwards transition relation. |
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* @return A reference to the backwards transition relation. |
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*/ |
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storm::models::GraphTransitions<T>& getBackwardTransitions() { |
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if (this->backwardTransitions == nullptr) { |
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this->backwardTransitions = new storm::models::GraphTransitions<T>(this->probabilityMatrix, false); |
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} |
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return *this->backwardTransitions; |
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} |
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/*! |
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* Retrieves whether this MDP has a state reward model. |
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* @return True if this MDP has a state reward model. |
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*/ |
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bool hasStateRewards() { |
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return this->stateRewards != nullptr; |
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} |
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/*! |
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* Retrieves whether this MDP has a transition reward model. |
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* @return True if this MDP has a transition reward model. |
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*/ |
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bool hasTransitionRewards() { |
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return this->transitionRewardMatrix != nullptr; |
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} |
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|
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/*! |
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* Retrieves whether the given atomic proposition is a valid atomic proposition in this model. |
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* @param atomicProposition The atomic proposition to be checked for validity. |
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* @return True if the given atomic proposition is valid in this model. |
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*/ |
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bool hasAtomicProposition(std::string const& atomicProposition) { |
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return this->stateLabeling->containsAtomicProposition(atomicProposition); |
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} |
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/*! |
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* Prints information about the model to the specified stream. |
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* @param out The stream the information is to be printed to. |
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*/ |
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void printModelInformationToStream(std::ostream& out) const { |
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storm::utility::printSeparationLine(out); |
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out << std::endl; |
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out << "Model type: \t\tMDP" << std::endl; |
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out << "States: \t\t" << this->getNumberOfStates() << std::endl; |
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out << "Transitions: \t\t" << this->getNumberOfTransitions() << std::endl; |
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this->stateLabeling->printAtomicPropositionsInformationToStream(out); |
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out << "Size in memory: \t" |
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<< (this->probabilityMatrix->getSizeInMemory() + |
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this->stateLabeling->getSizeInMemory() + |
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sizeof(*this))/1024 << " kbytes" << std::endl; |
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out << std::endl; |
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storm::utility::printSeparationLine(out); |
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} |
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storm::models::ModelType getType() { |
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return MDP; |
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} |
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private: |
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/*! |
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* @brief Perform some sanity checks. |
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* |
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* Checks probability matrix if all rows sum up to one. |
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*/ |
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bool checkValidityOfProbabilityMatrix() { |
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// Get the settings object to customize linear solving. |
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storm::settings::Settings* s = storm::settings::instance(); |
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double precision = s->get<double>("precision"); |
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for (uint_fast64_t row = 0; row < this->probabilityMatrix->getRowCount(); row++) { |
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T sum = this->probabilityMatrix->getRowSum(row); |
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if (sum == 0) continue; |
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if (std::abs(sum - 1) > precision) return false; |
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} |
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return true; |
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} |
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/*! A matrix representing the transition probability function of the MDP. */ |
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std::shared_ptr<storm::storage::SparseMatrix<T>> probabilityMatrix; |
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/*! The labeling of the states of the MDP. */ |
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std::shared_ptr<storm::models::AtomicPropositionsLabeling> stateLabeling; |
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/*! The state-based rewards of the MDP. */ |
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std::shared_ptr<std::vector<T>> stateRewards; |
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/*! The transition-based rewards of the MDP. */ |
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std::shared_ptr<storm::storage::SparseMatrix<T>> transitionRewardMatrix; |
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/*! |
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* A data structure that stores the predecessors for all states. This is |
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* needed for backwards directed searches. |
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*/ |
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storm::models::GraphTransitions<T>* backwardTransitions; |
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}; |
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} // namespace models |
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} // namespace storm |
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#endif /* STORM_MODELS_MDP_H_ */ |
@ -0,0 +1,53 @@ |
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/*
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* MdpParser.cpp |
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* |
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* Created on: 14.01.2013 |
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* Author: Philipp Berger |
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*/ |
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#include "src/parser/MdpParser.h"
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#include <string>
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#include <vector>
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#include "src/parser/NonDeterministicSparseTransitionParser.h"
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#include "src/parser/AtomicPropositionLabelingParser.h"
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#include "src/parser/SparseStateRewardParser.h"
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namespace storm { |
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namespace parser { |
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/*!
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* Parses a transition file and a labeling file and produces a MDP out of them; a pointer to the mdp |
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* is saved in the field "mdp" |
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* Note that the labeling file may have at most as many nodes as the transition file! |
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* |
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* @param transitionSystemFile String containing the location of the transition file (....tra) |
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* @param labelingFile String containing the location of the labeling file (....lab) |
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* @param stateRewardFile String containing the location of the state reward file (...srew) |
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* @param transitionRewardFile String containing the location of the transition reward file (...trew) |
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*/ |
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MdpParser::MdpParser(std::string const & transitionSystemFile, std::string const & labelingFile, |
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std::string const & stateRewardFile, std::string const & transitionRewardFile) { |
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storm::parser::NonDeterministicSparseTransitionParser tp(transitionSystemFile); |
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uint_fast64_t stateCount = tp.getMatrix()->getRowCount(); |
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std::shared_ptr<std::vector<double>> stateRewards = nullptr; |
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std::shared_ptr<storm::storage::SparseMatrix<double>> transitionRewards = nullptr; |
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storm::parser::AtomicPropositionLabelingParser lp(stateCount, labelingFile); |
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if (stateRewardFile != "") { |
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storm::parser::SparseStateRewardParser srp(stateCount, stateRewardFile); |
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stateRewards = srp.getStateRewards(); |
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} |
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if (transitionRewardFile != "") { |
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storm::parser::NonDeterministicSparseTransitionParser trp(transitionRewardFile); |
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transitionRewards = trp.getMatrix(); |
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} |
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mdp = std::shared_ptr<storm::models::Mdp<double>>(new storm::models::Mdp<double>(tp.getMatrix(), lp.getLabeling(), stateRewards, transitionRewards)); |
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} |
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} /* namespace parser */ |
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} /* namespace storm */ |
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/* |
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* MdpParser.h |
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* |
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* Created on: 14.01.2013 |
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* Author: thomas |
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*/ |
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#ifndef STORM_PARSER_MDPPARSER_H_ |
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#define STORM_PARSER_MDPPARSER_H_ |
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#include "src/parser/Parser.h" |
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#include "src/models/Mdp.h" |
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namespace storm { |
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namespace parser { |
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/*! |
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* @brief Load label and transition file and return initialized mdp object |
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* |
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* @Note This class creates a new Mdp object that can |
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* be accessed via getMdp(). However, it will not delete this object! |
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* |
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* @Note The labeling representation in the file may use at most as much nodes as are specified in the mdp. |
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*/ |
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class MdpParser: public storm::parser::Parser { |
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public: |
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MdpParser(std::string const & transitionSystemFile, std::string const & labelingFile, |
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std::string const & stateRewardFile = "", std::string const & transitionRewardFile = ""); |
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std::shared_ptr<storm::models::Mdp<double>> getMdp() { |
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return this->mdp; |
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} |
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private: |
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std::shared_ptr<storm::models::Mdp<double>> mdp; |
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}; |
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} /* namespace parser */ |
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} /* namespace storm */ |
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#endif /* STORM_PARSER_MDPPARSER_H_ */ |
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#ifndef MRMC_VECTOR_BITVECTOR_H_ |
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#define MRMC_VECTOR_BITVECTOR_H_ |
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#include <exception> |
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#include <new> |
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#include <cmath> |
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#include "boost/integer/integer_mask.hpp" |
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#include <pantheios/pantheios.hpp> |
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#include <pantheios/inserters/integer.hpp> |
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#include "src/exceptions/invalid_state.h" |
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#include "src/exceptions/invalid_argument.h" |
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#include "src/exceptions/out_of_range.h" |
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namespace mrmc { |
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namespace vector { |
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//! A Vector |
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/*! |
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A bit vector for boolean fields or quick selection schemas on Matrix entries. |
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Does NOT perform index bound checks! |
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*/ |
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template <class T> |
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class DenseVector { |
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public: |
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//! Constructor |
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/*! |
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\param initial_length The initial size of the boolean Array. Can be changed later on via BitVector::resize() |
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*/ |
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BitVector(uint_fast64_t initial_length) { |
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bucket_count = initial_length / 64; |
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if (initial_length % 64 != 0) { |
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++bucket_count; |
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} |
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bucket_array = new uint_fast64_t[bucket_count](); |
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// init all 0 |
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for (uint_fast64_t i = 0; i < bucket_count; ++i) { |
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bucket_array[i] = 0; |
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} |
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} |
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//! Copy Constructor |
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/*! |
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Copy Constructor. Creates an exact copy of the source bit vector bv. Modification of either bit vector does not affect the other. |
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@param bv A reference to the bit vector that should be copied from |
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*/ |
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BitVector(const BitVector &bv) : bucket_count(bv.bucket_count) |
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{ |
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pantheios::log_DEBUG("BitVector::CopyCTor: Using Copy() Ctor."); |
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bucket_array = new uint_fast64_t[bucket_count](); |
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memcpy(bucket_array, bv.bucket_array, sizeof(uint_fast64_t) * bucket_count); |
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} |
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~BitVector() { |
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if (bucket_array != NULL) { |
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delete[] bucket_array; |
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} |
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} |
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void resize(uint_fast64_t new_length) { |
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uint_fast64_t* tempArray = new uint_fast64_t[new_length](); |
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// 64 bit/entries per uint_fast64_t |
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uint_fast64_t copySize = (new_length <= (bucket_count * 64)) ? (new_length/64) : (bucket_count); |
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memcpy(tempArray, bucket_array, sizeof(uint_fast64_t) * copySize); |
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bucket_count = new_length / 64; |
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if (new_length % 64 != 0) { |
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++bucket_count; |
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} |
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delete[] bucket_array; |
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bucket_array = tempArray; |
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} |
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|
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void set(const uint_fast64_t index, const bool value) { |
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uint_fast64_t bucket = index / 64; |
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// Taking the step with mask is crucial as we NEED a 64bit shift, not a 32bit one. |
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// MSVC: C4334, use 1i64 or cast to __int64. |
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// result of 32-bit shift implicitly converted to 64 bits (was 64-bit shift intended?) |
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uint_fast64_t mask = 1; |
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mask = mask << (index % 64); |
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if (value) { |
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bucket_array[bucket] |= mask; |
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} else { |
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bucket_array[bucket] &= ~mask; |
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} |
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} |
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|
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bool get(const uint_fast64_t index) { |
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uint_fast64_t bucket = index / 64; |
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// Taking the step with mask is crucial as we NEED a 64bit shift, not a 32bit one. |
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// MSVC: C4334, use 1i64 or cast to __int64. |
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// result of 32-bit shift implicitly converted to 64 bits (was 64-bit shift intended?) |
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uint_fast64_t mask = 1; |
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mask = mask << (index % 64); |
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return ((bucket_array[bucket] & mask) == mask); |
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} |
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|
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// Operators |
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BitVector operator &(BitVector const &bv) { |
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uint_fast64_t minSize = (bv.bucket_count < this->bucket_count) ? bv.bucket_count : this->bucket_count; |
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BitVector result(minSize * 64); |
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for (uint_fast64_t i = 0; i < minSize; ++i) { |
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result.bucket_array[i] = this->bucket_array[i] & bv.bucket_array[i]; |
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} |
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return result; |
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} |
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BitVector operator |(BitVector const &bv) { |
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uint_fast64_t minSize = (bv.bucket_count < this->bucket_count) ? bv.bucket_count : this->bucket_count; |
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BitVector result(minSize * 64); |
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for (uint_fast64_t i = 0; i < minSize; ++i) { |
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result.bucket_array[i] = this->bucket_array[i] | bv.bucket_array[i]; |
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} |
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return result; |
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} |
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|
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BitVector operator ^(BitVector const &bv) { |
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uint_fast64_t minSize = (bv.bucket_count < this->bucket_count) ? bv.bucket_count : this->bucket_count; |
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BitVector result(minSize * 64); |
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for (uint_fast64_t i = 0; i < minSize; ++i) { |
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result.bucket_array[i] = this->bucket_array[i] ^ bv.bucket_array[i]; |
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} |
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return result; |
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} |
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BitVector operator ~() { |
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BitVector result(this->bucket_count * 64); |
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for (uint_fast64_t i = 0; i < this->bucket_count; ++i) { |
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result.bucket_array[i] = ~this->bucket_array[i]; |
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} |
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return result; |
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} |
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|
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/*! |
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* Returns the number of bits that are set (to one) in this bit vector. |
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* @return The number of bits that are set (to one) in this bit vector. |
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*/ |
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uint_fast64_t getNumberOfSetBits() { |
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uint_fast64_t set_bits = 0; |
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for (uint_fast64_t i = 0; i < bucket_count; i++) { |
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#ifdef __GNUG__ // check if we are using g++ and use built-in function if available |
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set_bits += __builtin_popcount (this->bucket_array[i]); |
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#else |
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uint_fast32_t cnt; |
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uint_fast64_t bitset = this->bucket_array[i]; |
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for (cnt = 0; bitset; cnt++) { |
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bitset &= bitset - 1; |
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} |
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set_bits += cnt; |
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#endif |
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} |
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return set_bits; |
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} |
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|
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/*! |
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* Returns the size of the bit vector in memory measured in bytes. |
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* @return The size of the bit vector in memory measured in bytes. |
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*/ |
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uint_fast64_t getSizeInMemory() { |
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return sizeof(*this) + sizeof(uint_fast64_t) * bucket_count; |
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} |
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private: |
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uint_fast64_t bucket_count; |
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/*! Array containing the boolean bits for each node, 64bits/64nodes per element */ |
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uint_fast64_t* bucket_array; |
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|
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}; |
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|
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} // namespace vector |
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|
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} // namespace mrmc |
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|
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#endif // MRMC_SPARSE_STATIC_SPARSE_MATRIX_H_ |
@ -0,0 +1,32 @@ |
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/*
|
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* ParseMdpTest.cpp |
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* |
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* Created on: 14.01.2013 |
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* Author: Thomas Heinemann |
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*/ |
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|
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|
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#include "gtest/gtest.h"
|
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#include "storm-config.h"
|
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#include "src/parser/MdpParser.h"
|
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#include "src/utility/IoUtility.h"
|
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|
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TEST(ParseMdpTest, parseAndOutput) { |
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storm::parser::MdpParser* mdpParser; |
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ASSERT_NO_THROW(mdpParser = new storm::parser::MdpParser( |
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STORM_CPP_TESTS_BASE_PATH "/parser/tra_files/mdp_general_input_01.tra", |
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STORM_CPP_TESTS_BASE_PATH "/parser/lab_files/pctl_general_input_01.lab")); |
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|
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std::shared_ptr<storm::models::Mdp<double>> mdp = mdpParser->getMdp(); |
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std::shared_ptr<storm::storage::SparseMatrix<double>> matrix = mdp->getTransitionProbabilityMatrix(); |
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|
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ASSERT_EQ(mdp->getNumberOfStates(), 3); |
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ASSERT_EQ(mdp->getNumberOfTransitions(), 11); |
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ASSERT_EQ(matrix->getRowCount(), 2 * 3); |
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ASSERT_EQ(matrix->getColumnCount(), 3); |
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|
|||
|
|||
delete mdpParser; |
|||
} |
|||
|
|||
|
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