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Implemented preprocessing steps 

Former-commit-id: 30fe6e1409
tempestpy_adaptions
TimQu 10 years ago
parent
1c0438ff38
commit
47f2e9592b
6 changed files with 206 additions and 32 deletions
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  1. 1
      .gitignore
  2. 153
      src/modelchecker/reachability/SparseDtmcRegionModelChecker.cpp
  3. 56
      src/modelchecker/reachability/SparseDtmcRegionModelChecker.h
  4. 8
      src/utility/cli.h
  5. 2
      src/utility/constants.h
  6. 2
      src/utility/regions.cpp

1
.gitignore
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@ -45,3 +45,4 @@ build//CMakeLists.txt
*.*~ *.*~
# CMake generated/configured files # CMake generated/configured files
src/utility/storm-version.cpp src/utility/storm-version.cpp
nbproject/

153
src/modelchecker/reachability/SparseDtmcRegionModelChecker.cpp
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@ -1,8 +1,5 @@
#include "src/modelchecker/reachability/SparseDtmcRegionModelChecker.h" #include "src/modelchecker/reachability/SparseDtmcRegionModelChecker.h"
//TODO remove useless includes
//#include <algorithm>
#include <chrono> #include <chrono>
#include "src/adapters/CarlAdapter.h" #include "src/adapters/CarlAdapter.h"
@ -122,7 +119,7 @@ namespace storm {
template<typename ParametricType, typename ConstantType> template<typename ParametricType, typename ConstantType>
SparseDtmcRegionModelChecker<ParametricType, ConstantType>::SparseDtmcRegionModelChecker(storm::models::sparse::Dtmc<ParametricType> const& model) : model(model), eliminationModelChecker(model) {
SparseDtmcRegionModelChecker<ParametricType, ConstantType>::SparseDtmcRegionModelChecker(storm::models::sparse::Dtmc<ParametricType> const& model) : model(model), eliminationModelChecker(model), probabilityOperatorFormula(nullptr) {
// Intentionally left empty. // Intentionally left empty.
} }
@ -155,14 +152,13 @@ namespace storm {
template<typename ParametricType, typename ConstantType> template<typename ParametricType, typename ConstantType>
void SparseDtmcRegionModelChecker<ParametricType, ConstantType>::specifyFormula(storm::logic::Formula const& formula) { void SparseDtmcRegionModelChecker<ParametricType, ConstantType>::specifyFormula(storm::logic::Formula const& formula) {
std::chrono::high_resolution_clock::time_point timeStart = std::chrono::high_resolution_clock::now();
std::chrono::high_resolution_clock::time_point timePreprocessingStart = std::chrono::high_resolution_clock::now();
STORM_LOG_THROW(this->canHandle(formula), storm::exceptions::IllegalArgumentException, "Tried to specify a formula that can not be handled."); STORM_LOG_THROW(this->canHandle(formula), storm::exceptions::IllegalArgumentException, "Tried to specify a formula that can not be handled.");
//Get subformula, initial state, target states //Get subformula, initial state, target states
//Note: canHandle already ensures that the formula has the right shape and that the model has a single initial state. //Note: canHandle already ensures that the formula has the right shape and that the model has a single initial state.
this->probabilityOperatorFormula= std::unique_ptr<storm::logic::ProbabilityOperatorFormula>(new storm::logic::ProbabilityOperatorFormula(formula.asStateFormula().asProbabilityOperatorFormula())); this->probabilityOperatorFormula= std::unique_ptr<storm::logic::ProbabilityOperatorFormula>(new storm::logic::ProbabilityOperatorFormula(formula.asStateFormula().asProbabilityOperatorFormula()));
storm::logic::EventuallyFormula const& eventuallyFormula = this->probabilityOperatorFormula->getSubformula().asPathFormula().asEventuallyFormula(); storm::logic::EventuallyFormula const& eventuallyFormula = this->probabilityOperatorFormula->getSubformula().asPathFormula().asEventuallyFormula();
storm::storage::sparse::state_type initialState = *model.getInitialStates().begin();
std::unique_ptr<CheckResult> targetStatesResultPtr = this->eliminationModelChecker.check(eventuallyFormula.getSubformula()); std::unique_ptr<CheckResult> targetStatesResultPtr = this->eliminationModelChecker.check(eventuallyFormula.getSubformula());
storm::storage::BitVector const& targetStates = targetStatesResultPtr->asExplicitQualitativeCheckResult().getTruthValuesVector(); storm::storage::BitVector const& targetStates = targetStatesResultPtr->asExplicitQualitativeCheckResult().getTruthValuesVector();
@ -184,28 +180,126 @@ namespace storm {
maybeStates &= reachableStates; maybeStates &= reachableStates;
// Create a vector for the probabilities to go to a state with probability 1 in one step. // Create a vector for the probabilities to go to a state with probability 1 in one step.
this->oneStepProbabilities = model.getTransitionMatrix().getConstrainedRowSumVector(maybeStates, statesWithProbability1); this->oneStepProbabilities = model.getTransitionMatrix().getConstrainedRowSumVector(maybeStates, statesWithProbability1);
// Determine the set of initial states of the sub-model.
storm::storage::BitVector newInitialStates = model.getInitialStates() % maybeStates;
// Determine the initial state of the sub-model.
//storm::storage::BitVector newInitialStates = model.getInitialStates() % maybeStates;
this->initialState = *(model.getInitialStates() % maybeStates).begin();
// We then build the submatrix that only has the transitions of the maybe states. // We then build the submatrix that only has the transitions of the maybe states.
storm::storage::SparseMatrix<ParametricType> submatrix = model.getTransitionMatrix().getSubmatrix(false, maybeStates, maybeStates); storm::storage::SparseMatrix<ParametricType> submatrix = model.getTransitionMatrix().getSubmatrix(false, maybeStates, maybeStates);
storm::storage::SparseMatrix<ParametricType> submatrixTransposed = submatrix.transpose(); storm::storage::SparseMatrix<ParametricType> submatrixTransposed = submatrix.transpose();
//TODO do we need this?
std::vector<std::size_t> statePriorities = this->eliminationModelChecker.getStatePriorities(submatrix, submatrixTransposed, newInitialStates, oneStepProbabilities);
// Then, we convert the reduced matrix to a more flexible format to be able to perform state elimination more easily. // Then, we convert the reduced matrix to a more flexible format to be able to perform state elimination more easily.
FlexibleMatrix flexibleMatrix = this->eliminationModelChecker.getFlexibleSparseMatrix(submatrix);
FlexibleMatrix flexibleBackwardTransitions = this->eliminationModelChecker.getFlexibleSparseMatrix(submatrixTransposed, true);
this->flexibleTransitions = this->eliminationModelChecker.getFlexibleSparseMatrix(submatrix);
this->flexibleBackwardTransitions = this->eliminationModelChecker.getFlexibleSparseMatrix(submatrixTransposed, true);
// Create a bit vector that represents the current subsystem, i.e., states that we have not eliminated. // Create a bit vector that represents the current subsystem, i.e., states that we have not eliminated.
storm::storage::BitVector subsystem = storm::storage::BitVector(submatrix.getRowCount(), true);
eliminateStates(subsystem, flexibleMatrix, oneStepProbabilities, flexibleBackwardTransitions, newInitialStates, submatrix, statePriorities);
this->subsystem = storm::storage::BitVector(submatrix.getRowCount(), true);
std::chrono::high_resolution_clock::time_point timeInitialStateEliminationStart = std::chrono::high_resolution_clock::now();
// eliminate all states with only constant outgoing transitions
//TODO: maybe also states with constant incoming tranistions. THEN the ordering of the eliminated states does matter.
eliminateStatesConstSucc(this->subsystem, this->flexibleTransitions, this->flexibleBackwardTransitions, this->oneStepProbabilities, this->initialState);
STORM_LOG_DEBUG("Eliminated " << subsystem.size() - subsystem.getNumberOfSetBits() << " of " << subsystem.size() << " states that had constant outgoing transitions." << std::endl);
std::cout << "Eliminated " << subsystem.size() - subsystem.getNumberOfSetBits() << " of " << subsystem.size() << " states that had constant outgoing transitions." << std::endl;
//eliminate the remaining states to get the reachability probability function
this->sparseTransitions = flexibleTransitions.getSparseMatrix();
this->sparseBackwardTransitions = this->sparseTransitions.transpose();
this->reachProbFunction = computeReachProbFunction(this->subsystem, this->flexibleTransitions, this->flexibleBackwardTransitions, this->sparseTransitions, this->sparseBackwardTransitions, this->oneStepProbabilities, this->initialState);
std::cout << std::endl <<"the resulting reach prob function is " << std::endl << this->reachProbFunction << std::endl << std::endl;
std::chrono::high_resolution_clock::time_point timeInitialStateEliminationEnd = std::chrono::high_resolution_clock::now();
//some information for statistics...
std::chrono::high_resolution_clock::time_point timePreprocessingEnd = std::chrono::high_resolution_clock::now();
this->timePreprocessing= timePreprocessingEnd - timePreprocessingStart;
this->timeInitialStateElimination = timeInitialStateEliminationEnd-timeInitialStateEliminationStart;
this->numOfCheckedRegions=0;
}
template<typename ParametricType, typename ConstantType>
void SparseDtmcRegionModelChecker<ParametricType, ConstantType>::eliminateStatesConstSucc(
storm::storage::BitVector& subsys,
FlexibleMatrix& flexTransitions,
FlexibleMatrix& flexBackwardTransitions,
std::vector<ParametricType>& oneStepProbs,
storm::storage::sparse::state_type const& initialState) {
//temporarily unselect the initial state to skip it.
subsys.set(initialState, false);
boost::optional<std::vector<ParametricType>> missingStateRewards;
for (auto const& state : subsys) {
bool onlyConstantOutgoingTransitions=true;
for(auto const& entry : flexTransitions.getRow(state)){
if(!this->parametricTypeComparator.isConstant(entry.getValue())){
onlyConstantOutgoingTransitions=false;
break;
}
}
if(onlyConstantOutgoingTransitions){
this->eliminationModelChecker.eliminateState(flexTransitions, oneStepProbs, state, flexBackwardTransitions, missingStateRewards);
subsys.set(state,false);
}
}
subsys.set(initialState, true);
}
// std::chrono::high_resolution_clock::time_point timeStateElemEnd = std::chrono::high_resolution_clock::now();
template<typename ParametricType, typename ConstantType>
ParametricType SparseDtmcRegionModelChecker<ParametricType, ConstantType>::computeReachProbFunction(
storm::storage::BitVector const& subsys,
FlexibleMatrix const& flexTransitions,
FlexibleMatrix const& flexBackwardTransitions,
storm::storage::SparseMatrix<ParametricType> const& spTransitions,
storm::storage::SparseMatrix<ParametricType> const& spBackwardTransitions,
std::vector<ParametricType> const& oneStepProbs,
storm::storage::sparse::state_type const& initState){
//Note: this function is very similar to eliminationModelChecker.computeReachabilityValue
//get working copies of the flexible transitions and oneStepProbabilities with which we will actually work (eliminate states etc).
FlexibleMatrix workingCopyFlexTrans(flexTransitions);
FlexibleMatrix workingCopyFlexBackwTrans(flexBackwardTransitions);
std::vector<ParametricType> workingCopyOneStepProbs(oneStepProbs);
storm::storage::BitVector initialStates(subsys.size(),false);
initialStates.set(initState, true);
std::vector<std::size_t> statePriorities = this->eliminationModelChecker.getStatePriorities(spTransitions, spBackwardTransitions, initialStates, workingCopyOneStepProbs);
boost::optional<std::vector<ParametricType>> missingStateRewards;
// Remove the initial state from the states which we need to eliminate.
storm::storage::BitVector statesToEliminate(subsys);
statesToEliminate.set(initState, false);
//pure state elimination or hybrid method?
if (storm::settings::sparseDtmcEliminationModelCheckerSettings().getEliminationMethod() == storm::settings::modules::SparseDtmcEliminationModelCheckerSettings::EliminationMethod::State) {
std::vector<storm::storage::sparse::state_type> states(statesToEliminate.begin(), statesToEliminate.end());
std::sort(states.begin(), states.end(), [&statePriorities] (storm::storage::sparse::state_type const& a, storm::storage::sparse::state_type const& b) { return statePriorities[a] < statePriorities[b]; });
std::chrono::high_resolution_clock::time_point timePreprocessingEnd = std::chrono::high_resolution_clock::now();
STORM_LOG_DEBUG("Eliminating " << states.size() << " states using the state elimination technique." << std::endl);
for (auto const& state : states) {
this->eliminationModelChecker.eliminateState(workingCopyFlexTrans, workingCopyOneStepProbs, state, workingCopyFlexBackwTrans, missingStateRewards);
}
}
else if (storm::settings::sparseDtmcEliminationModelCheckerSettings().getEliminationMethod() == storm::settings::modules::SparseDtmcEliminationModelCheckerSettings::EliminationMethod::Hybrid) {
uint_fast64_t maximalDepth = 0;
std::vector<storm::storage::sparse::state_type> entryStateQueue;
STORM_LOG_DEBUG("Eliminating " << statesToEliminate.size() << " states using the hybrid elimination technique." << std::endl);
maximalDepth = eliminationModelChecker.treatScc(workingCopyFlexTrans, workingCopyOneStepProbs, initialStates, statesToEliminate, spTransitions, workingCopyFlexBackwTrans, false, 0, storm::settings::sparseDtmcEliminationModelCheckerSettings().getMaximalSccSize(), entryStateQueue, missingStateRewards, statePriorities);
// If the entry states were to be eliminated last, we need to do so now.
STORM_LOG_DEBUG("Eliminating " << entryStateQueue.size() << " entry states as a last step.");
if (storm::settings::sparseDtmcEliminationModelCheckerSettings().isEliminateEntryStatesLastSet()) {
for (auto const& state : entryStateQueue) {
eliminationModelChecker.eliminateState(workingCopyFlexTrans, workingCopyOneStepProbs, state, workingCopyFlexBackwTrans, missingStateRewards);
}
}
}
else {
STORM_LOG_THROW(false, storm::exceptions::NotImplementedException, "The selected state elimination Method has not been implemented.");
}
//finally, eliminate the initial state
this->eliminationModelChecker.eliminateState(workingCopyFlexTrans, workingCopyOneStepProbs, initState, workingCopyFlexBackwTrans, missingStateRewards);
return workingCopyOneStepProbs[initState];
} }
@ -682,6 +776,31 @@ namespace storm {
} }
} }
template<typename ParametricType, typename ConstantType>
void SparseDtmcRegionModelChecker<ParametricType, ConstantType>::printStatisticsToStream(std::ostream& outstream) {
std::chrono::milliseconds timePreprocessingInMilliseconds = std::chrono::duration_cast<std::chrono::milliseconds>(this->timePreprocessing);
std::chrono::milliseconds timeInitialStateEliminationInMilliseconds = std::chrono::duration_cast<std::chrono::milliseconds>(this->timeInitialStateElimination);
std::chrono::high_resolution_clock::duration timeOverall = timePreprocessing; // + ...
std::chrono::milliseconds timeOverallInMilliseconds = std::chrono::duration_cast<std::chrono::milliseconds>(timeOverall);
outstream << std::endl << "Statistics Region Model Checker:" << std::endl;
outstream << "-----------------------------------------------" << std::endl;
outstream << "Model: " << this->model.getNumberOfStates() << " states, " << this->model.getNumberOfTransitions() << " transitions." << std::endl;
outstream << "Reduced model: " << this->subsystem.getNumberOfSetBits() << " states, " << this->sparseTransitions.getEntryCount() << "transitions" << std::endl;
outstream << "Formula: " << *this->probabilityOperatorFormula << std::endl;
outstream << "Number of checked regions: " << this->numOfCheckedRegions << std::endl;
outstream << "Running times:" << std::endl;
outstream << " " << timeOverallInMilliseconds.count() << "ms overall" << std::endl;
outstream << " " << timePreprocessingInMilliseconds.count() << "ms Preprocessing including... " << std::endl;
outstream << " " << timeInitialStateEliminationInMilliseconds.count() << "ms Initial state elimination" << std::endl;
//outstream << " " << timeInMilliseconds.count() << "ms " << std::endl;
outstream << "-----------------------------------------------" << std::endl;
}
#endif #endif
#ifdef STORM_HAVE_CARL #ifdef STORM_HAVE_CARL

56
src/modelchecker/reachability/SparseDtmcRegionModelChecker.h
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@ -92,6 +92,11 @@ namespace storm {
* ParameterRegions should contain all parameters. * ParameterRegions should contain all parameters.
*/ */
bool checkRegion(storm::logic::Formula const& formula, std::vector<ParameterRegion> parameterRegions); bool checkRegion(storm::logic::Formula const& formula, std::vector<ParameterRegion> parameterRegions);
/*!
* Prints statistical information (mostly running times) to the given stream.
*/
void printStatisticsToStream(std::ostream& outstream);
private: private:
typedef typename storm::modelchecker::SparseDtmcEliminationModelChecker<ParametricType>::FlexibleSparseMatrix FlexibleMatrix; typedef typename storm::modelchecker::SparseDtmcEliminationModelChecker<ParametricType>::FlexibleSparseMatrix FlexibleMatrix;
@ -137,29 +142,68 @@ namespace storm {
template <typename ValueType> template <typename ValueType>
bool valueIsInBoundOfFormula(ValueType value); bool valueIsInBoundOfFormula(ValueType value);
//eliminates all states for which the outgoing transitions are constant.
void eliminateStatesConstSucc(
storm::storage::BitVector& subsys,
FlexibleMatrix& flexTransitions,
FlexibleMatrix& flexBackwardTransitions,
std::vector<ParametricType>& oneStepProbs,
storm::storage::sparse::state_type const& initState
);
//Computes the reachability probability function by performing state elimination
ParametricType computeReachProbFunction(
storm::storage::BitVector const& subsys,
FlexibleMatrix const& flexTransitions,
FlexibleMatrix const& flexBackwardTransitions,
storm::storage::SparseMatrix<ParametricType> const& spTransitions,
storm::storage::SparseMatrix<ParametricType> const& spBackwardTransitions,
std::vector<ParametricType> const& oneStepProbs,
storm::storage::sparse::state_type const& initState
);
// The model this model checker is supposed to analyze. // The model this model checker is supposed to analyze.
storm::models::sparse::Dtmc<ParametricType> const& model; storm::models::sparse::Dtmc<ParametricType> const& model;
//classes that provide auxilliary functions
// Instance of an elimination model checker to access its functions // Instance of an elimination model checker to access its functions
storm::modelchecker::SparseDtmcEliminationModelChecker<ParametricType> eliminationModelChecker; storm::modelchecker::SparseDtmcEliminationModelChecker<ParametricType> eliminationModelChecker;
// comparators that can be used to compare constants.
storm::utility::ConstantsComparator<ParametricType> parametricTypeComparator;
storm::utility::ConstantsComparator<ConstantType> constantTypeComparator;
//
// A comparator that can be used to compare constants.
//storm::utility::ConstantsComparator<ParametricType> comparator;
//the following members depend on the currently specified formula:
//the following members depend on the currently specified formula
//the currently specified formula //the currently specified formula
std::unique_ptr<storm::logic::ProbabilityOperatorFormula> probabilityOperatorFormula; std::unique_ptr<storm::logic::ProbabilityOperatorFormula> probabilityOperatorFormula;
// the propabilities to go to a state with probability 1 in one step
// The ingredients of the model where constant transitions have been eliminated as much as possible
// the probability matrix
FlexibleMatrix flexibleTransitions;
storm::storage::SparseMatrix<ParametricType> sparseTransitions;
//the corresponding backward transitions
FlexibleMatrix flexibleBackwardTransitions;
storm::storage::SparseMatrix<ParametricType> sparseBackwardTransitions;
// the propabilities to go to a state with probability 1 in one step (belongs to flexibleTransitions)
std::vector<ParametricType> oneStepProbabilities; std::vector<ParametricType> oneStepProbabilities;
// the initial state
storm::storage::sparse::state_type initialState;
// the set of states that have not been eliminated
storm::storage::BitVector subsystem;
// The function for the reachability probability in the initial state // The function for the reachability probability in the initial state
ParametricType reachProbFunction; ParametricType reachProbFunction;
// running times
// runtimes and other information for statistics.
uint_fast64_t numOfCheckedRegions;
std::chrono::high_resolution_clock::duration timePreprocessing;
std::chrono::high_resolution_clock::duration timeInitialStateElimination;
}; };
} // namespace modelchecker } // namespace modelchecker

8
src/utility/cli.h
View File

@ -478,6 +478,13 @@ namespace storm {
auto regions=storm::utility::regions::RegionParser<storm::RationalFunction, double>::getRegionsFromSettings(); auto regions=storm::utility::regions::RegionParser<storm::RationalFunction, double>::getRegionsFromSettings();
storm::modelchecker::SparseDtmcRegionModelChecker<storm::RationalFunction, double> modelchecker(*dtmc); storm::modelchecker::SparseDtmcRegionModelChecker<storm::RationalFunction, double> modelchecker(*dtmc);
if (modelchecker.canHandle(*formula.get())) {
modelchecker.specifyFormula(*formula.get());
}
else {
STORM_LOG_THROW(false, storm::exceptions::InvalidSettingsException, "The parametric region check engine currently does not support this property.");
}
auto result = modelchecker.checkRegion(*formula.get(), regions); auto result = modelchecker.checkRegion(*formula.get(), regions);
std::cout << "... done." << std::endl; std::cout << "... done." << std::endl;
if (!result){ if (!result){
@ -486,6 +493,7 @@ namespace storm {
for(auto const& reg : regions){ for(auto const& reg : regions){
std::cout << reg.getRegionAsString() << " Result: " << reg.getCheckResultAsString() << std::endl; std::cout << reg.getRegionAsString() << " Result: " << reg.getCheckResultAsString() << std::endl;
} }
modelchecker.printStatisticsToStream(std::cout);
} }
else{ else{

2
src/utility/constants.h
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@ -58,6 +58,8 @@ namespace storm {
bool isZero(ValueType const& value) const; bool isZero(ValueType const& value) const;
bool isEqual(ValueType const& value1, ValueType const& value2) const; bool isEqual(ValueType const& value1, ValueType const& value2) const;
bool isConstant(ValueType const& value) const;
}; };
// For floats we specialize this class and consider the comparison modulo some predefined precision. // For floats we specialize this class and consider the comparison modulo some predefined precision.

2
src/utility/regions.cpp
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@ -52,7 +52,7 @@ namespace storm {
STORM_LOG_WARN_COND((upperBound==convertNumber<BoundType, double>(ub, true, actualPrecision)), "The upper bound of '"<< parameterBoundsString << "' could not be parsed accurately. Increase precision?"); STORM_LOG_WARN_COND((upperBound==convertNumber<BoundType, double>(ub, true, actualPrecision)), "The upper bound of '"<< parameterBoundsString << "' could not be parsed accurately. Increase precision?");
lowerBounds.emplace(std::make_pair(var, lb)); lowerBounds.emplace(std::make_pair(var, lb));
upperBounds.emplace(std::make_pair(var, ub)); upperBounds.emplace(std::make_pair(var, ub));
std::cout << "parsed bounds " << parameterBoundsString << ": lb=" << lowerBound << " ub=" << upperBound << " param='" << parameter << "' precision=" << actualPrecision << std::endl;
// std::cout << "parsed bounds " << parameterBoundsString << ": lb=" << lowerBound << " ub=" << upperBound << " param='" << parameter << "' precision=" << actualPrecision << std::endl;
} }
template<typename ParametricType, typename ConstantType> template<typename ParametricType, typename ConstantType>

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