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Added temporary Find* files for CMake 

Added custom exceptions
Added Sparse Matrix
Added Guidelines for Doxygen
Added BUILD hints
tempestpy_adaptions
PBerger 13 years ago
parent
4cd75789ac
commit
31d2c70acc
12 changed files with 1049 additions and 13 deletions
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  1. 66
      CMakeLists.txt
  2. 445
      FindPantheios.cmake
  3. 56
      FindSTLSoft.cmake
  4. 16
      resources/BUILD.txt
  5. 56
      resources/GUIDELINES-Doxygen.example.h
  6. 23
      src/exceptions/invalid_argument.h
  7. 25
      src/exceptions/invalid_state.h
  8. 23
      src/exceptions/out_of_range.h
  9. 41
      src/mrmc-cpp.cpp
  10. 195
      src/sparse/static_sparse_matrix.h
  11. 13
      test/mrmc-tests.cpp
  12. 103
      test/sparse/static_sparse_matrix.cpp

66
CMakeLists.txt
View File

@ -17,29 +17,79 @@ configure_file (
# so that we will find TutorialConfig.h
include_directories("${PROJECT_BINARY_DIR}")
#add_executable(MRMC-cpp src/mrmc-cpp.cpp)
FILE(GLOB_RECURSE MRMCSources ${PROJECT_SOURCE_DIR}/src/*.cpp)
# Main Sources
FILE(GLOB_RECURSE MRMCHeaders ${PROJECT_SOURCE_DIR}/src/*.h)
FILE(GLOB_RECURSE MRMCSources ${PROJECT_SOURCE_DIR}/src/*.cpp)
# Test Sources
FILE(GLOB_RECURSE MRMCTestHeaders ${PROJECT_SOURCE_DIR}/test/*.h)
FILE(GLOB_RECURSE MRMCTestSources ${PROJECT_SOURCE_DIR}/test/*.cpp)
# Main Grouping
SOURCE_GROUP(Headers FILES ${MRMCHeaders})
SOURCE_GROUP(Sources FILES ${MRMCSources})
ADD_EXECUTABLE(MRMC-cpp ${MRMCSources} ${MRMCHeaders})
# Test Grouping
SOURCE_GROUP(Headers FILES ${MRMCTestHeaders})
SOURCE_GROUP(Sources FILES ${MRMCTestSources})
# Add base folder for better inclusion pathes
include_directories("${PROJECT_SOURCE_DIR}")
include_directories("${PROJECT_SOURCE_DIR}/src")
# temp search path for Pantheios/STLSoft
message(STATUS "CMAKE_MODULE_PATH = ${CMAKE_MODULE_PATH}")
set(CMAKE_MODULE_PATH ${PROJECT_SOURCE_DIR})
message(STATUS "CMAKE_MODULE_PATH = ${CMAKE_MODULE_PATH}")
# external packages
FIND_PACKAGE(GTest REQUIRED)
find_package(Threads REQUIRED)
SET(Boost_USE_STATIC_LIBS ON)
SET(Boost_USE_MULTITHREADED ON)
SET(Boost_USE_STATIC_RUNTIME OFF)
FIND_PACKAGE(Boost REQUIRED)
FIND_PACKAGE(Doxygen REQUIRED)
FIND_PACKAGE(STLSoft REQUIRED)
set(PANTHEIOS_USE_DYNAMIC_RUNTIME ON)
FIND_PACKAGE(Pantheios REQUIRED COMPONENTS SimpleFrontEnd File)
# STLsoft headers
# include_directories("${PROJECT_SRC_DIR}/resources/3rdParty/stlsoft-1.9.114")
# Pantheios Logging library
# include_directories("${PROJECT_SRC_DIR}/resources/3rdParty/pantheios-1.0.1-beta213")
if (STLSOFT_FOUND)
message(STATUS "STLSoft found")
INCLUDE_DIRECTORIES(${STLSOFT_INCLUDE_DIR})
endif()
IF (PANTHEIOS_FOUND)
message(STATUS "Pantheios found")
INCLUDE_DIRECTORIES(${PANTHEIOS_INCLUDE_DIR})
LINK_DIRECTORIES(${PANTHEIOS_LIBRARY_DIRS})
else()
message(STATUS "NO PANTHEIOS!")
ENDIF()
if(Boost_FOUND)
include_directories(${Boost_INCLUDE_DIRS})
if ((NOT Boost_LIBRARY_DIRS) OR ("${Boost_LIBRARY_DIRS}" STREQUAL ""))
set(Boost_LIBRARY_DIRS "${Boost_INCLUDE_DIRS}/stage/lib")
message(STATUS "Boost_LIBRARY_DIRS was empty, setting to ${Boost_LIBRARY_DIRS}")
endif ()
link_directories(${Boost_LIBRARY_DIRS})
endif(Boost_FOUND)
# must be created AFTER Boost was added because of LINK_DIRECTORIES
ADD_EXECUTABLE(MRMC-cpp ${MRMCSources} ${MRMCHeaders})
ADD_EXECUTABLE(MRMC-tests ${MRMCTestSources} ${MRMCTestHeaders})
# Add target link deps for Pantheios
target_link_libraries(MRMC-cpp ${PANTHEIOS_LIBRARIES})
target_link_libraries(MRMC-tests ${PANTHEIOS_LIBRARIES})
# add a target to generate API documentation with Doxygen
if(DOXYGEN_FOUND)
@ -60,8 +110,6 @@ if (GTEST_FOUND)
# For Visual Studio builds, defines Visual Studio project named RUN_TESTS.
enable_testing()
add_executable(MRMC-tests ${PROJECT_SOURCE_DIR}/test/mrmc-tests.cpp)
include_directories(${GTEST_INCLUDE_DIRS})
target_link_libraries(MRMC-tests ${GTEST_LIBRARIES})

445
FindPantheios.cmake
View File

@ -0,0 +1,445 @@
# Locate the Pantheois Logging Framework.
#
# Defines the following variables:
#
# PANTHEIOS_FOUND - Found the Pantheios Logging Framework
# PANTHEIOS_INCLUDE_DIRS - Include directories
#
# Accepts the following variables as input:
#
# PANTHEIOS_ROOT - (as a CMake or environment variable)
# The root directory of the pantheios install prefix
#
# PANTHEIOS_USE_DYNAMIC_RUNTIME
#
# If you want to use splitting, specify LRSplit and than preface the components with L and R, so e.g. LRSplit LFile RSyslog
# To use more than one BackEnd, specify NBackEnd followed by a list of components. NBackEnd requires the NFrontEnd.
#
# Possible Components for BackEnd:
# ACELogger
# COMErrorObject
# File
# FileCallback
# FPrintf
# FPrintfCallback
# Null
# Speech
# Syslog
# WindowsConsole
# WindowsConsoleCallback
# WindowsDebugger
# WindowsDebuggerCallback
# WindowsEventLog
# WindowsMessageBox
# WindowsSyslog
# WindowsSyslogCallback
#
# Possible components for FrontEnd:
# NoFrontEnd
# SimpleFrontEnd
# NFrontEnd
#
#
#=============================================================================
# Copyright 2012 Philipp Berger <admin@philippberger.de>
#
# Distributed under the OSI-approved BSD License (the "License");
# see accompanying file Copyright.txt for details.
#
# This software is distributed WITHOUT ANY WARRANTY; without even the
# implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
# See the License for more information.
#=============================================================================
# (To distribute this file outside of CMake, substitute the full
# License text for the above reference.)
#
# Credits:
#
# HUGE thanks to Michael Wild
# Additional thanks to:
# Mateusz Loskot
# Rolf Eike Beer
# default for WideString option
set(PANTHEIOS_WIDESTRING 0)
# default for Front- and BackEnd
set(PANTHEIOS_FRONTEND "simple")
set(PANTHEIOS_BACKEND "file")
set(PANTHEIOS_BACKEND_L OFF)
set(PANTHEIOS_BACKEND_R OFF)
set(PANTHEIOS_BACKEND_LIST)
# Use FIND_PACKAGE( Pantheios COMPONENTS ... ) to enable modules
if( Pantheios_FIND_COMPONENTS )
list(FIND Pantheios_FIND_COMPONENTS "LRSplit" PANTHEIOS_use_lrsplit)
list(FIND Pantheios_FIND_COMPONENTS "NFrontEnd" PANTHEIOS_use_nfe)
list(FIND Pantheios_FIND_COMPONENTS "NBackEnd" PANTHEIOS_use_nbe)
list(FIND Pantheios_FIND_COMPONENTS "WideString" PANTHEIOS_use_ws)
list(REMOVE_ITEM Pantheios_FIND_COMPONENTS "LRSplit" "NFrontEnd" "NBackEnd" "WideString")
if (NOT PANTHEIOS_use_ws EQUAL -1)
# Use WideString
set(PANTHEIOS_WIDESTRING 1)
endif()
if (NOT PANTHEIOS_use_lrsplit EQUAL -1)
# Found LRSplit
set(PANTHEIOS_BACKEND "lrsplit")
if (NOT PANTHEIOS_use_nbe EQUAL -1)
# Also found NBe
message(FATAL_ERROR "Pantheios: Use either LRSplit or NBackEnd, not both.")
endif()
if (NOT PANTHEIOS_use_nfe EQUAL -1)
# Also found NFe
message(FATAL_ERROR "Pantheios: Use either LRSplit or NFrontEnd, not both.")
endif()
foreach( component ${Pantheios_FIND_COMPONENTS} )
# LRSplit L BackEnds
string(SUBSTRING ${component} 0 1 _sub_comp_head)
string(LENGTH ${component} _length_comp)
math(EXPR _length_comp_tail "${_length_comp} - 1")
string(SUBSTRING ${component} 1 ${_length_comp_tail} _sub_comp_tail)
if ((_sub_comp_tail STREQUAL "ACELogger") OR (_sub_comp_tail STREQUAL "COMErrorObject") OR (_sub_comp_tail STREQUAL "File") OR (_sub_comp_tail STREQUAL "FileCallback") OR (_sub_comp_tail STREQUAL "FPrintf") OR (_sub_comp_tail STREQUAL "FPrintfCallback") OR (_sub_comp_tail STREQUAL "Null") OR (_sub_comp_tail STREQUAL "Speech") OR (_sub_comp_tail STREQUAL "Syslog") OR (_sub_comp_tail STREQUAL "WindowsConsole") OR (_sub_comp_tail STREQUAL "WindowsConsoleCallback") OR (_sub_comp_tail STREQUAL "WindowsDebugger") OR (_sub_comp_tail STREQUAL "WindowsDebuggerCallback") OR (_sub_comp_tail STREQUAL "WindowsEventLog") OR (_sub_comp_tail STREQUAL "WindowsMessageBox") OR (_sub_comp_tail STREQUAL "WindowsSyslog") OR (_sub_comp_tail STREQUAL "WindowsSyslogCallback"))
if ((_sub_comp_head STREQUAL L) OR (_sub_comp_head STREQUAL R))
message(STATUS "Pantheios: Setting LRSplit BackEnd ${_sub_comp_head} to ${_sub_comp_tail}")
string(TOLOWER ${_sub_comp_tail} _sub_comp_tail_low)
set(PANTHEIOS_BACKEND_${_sub_comp_head} "${_sub_comp_tail_low}")
else ()
message(FATAL_ERROR "Pantheios: Internal Parsing Error")
endif()
# FrontEnds
elseif (component STREQUAL "NoFrontEnd")
message(STATUS "Pantheios: Setting FrontEnd to NoFrontEnd")
set(PANTHEIOS_FRONTEND "null")
elseif (component STREQUAL "SimpleFrontEnd")
message(STATUS "Pantheios: Setting FrontEnd to SimpleFrontEnd")
set(PANTHEIOS_FRONTEND "simple")
else ()
message(FATAL_ERROR "Unknown Component: ${component}")
endif ()
endforeach(component)
elseif (NOT PANTHEIOS_use_nbe EQUAL -1)
# Found NBackEnd
if (PANTHEIOS_use_nfe EQUAL -1)
message(FATAL_ERROR "Pantheios: Usage of NBackEnd requires the NFrontEnd.")
endif()
set(PANTHEIOS_BACKEND "N")
set(PANTHEIOS_FRONTEND "N")
foreach( component ${Pantheios_FIND_COMPONENTS} )
# Std BackEnds
if ((component STREQUAL "ACELogger") OR (component STREQUAL "COMErrorObject") OR (component STREQUAL "File") OR (component STREQUAL "FileCallback") OR (component STREQUAL "FPrintf") OR (component STREQUAL "FPrintfCallback") OR (component STREQUAL "Null") OR (component STREQUAL "Speech") OR (component STREQUAL "Syslog") OR (component STREQUAL "WindowsConsole") OR (component STREQUAL "WindowsConsoleCallback") OR (component STREQUAL "WindowsDebugger") OR (component STREQUAL "WindowsDebuggerCallback") OR (component STREQUAL "WindowsEventLog") OR (component STREQUAL "WindowsMessageBox") OR (component STREQUAL "WindowsSyslog") OR (component STREQUAL "WindowsSyslogCallback"))
message(STATUS "Pantheios: Adding BackEnd ${component}")
string(TOLOWER ${component} _low_comp)
list(APPEND PANTHEIOS_BACKEND_LIST ${_low_comp})
else ()
message(FATAL_ERROR "Unknown Component: ${component}")
endif ()
endforeach(component)
else ()
# Simple, one FE, one BE
foreach( component ${Pantheios_FIND_COMPONENTS} )
if ((component STREQUAL "ACELogger") OR (component STREQUAL "COMErrorObject") OR (component STREQUAL "File") OR (component STREQUAL "FileCallback") OR (component STREQUAL "FPrintf") OR (component STREQUAL "FPrintfCallback") OR (component STREQUAL "Null") OR (component STREQUAL "Speech") OR (component STREQUAL "Syslog") OR (component STREQUAL "WindowsConsole") OR (component STREQUAL "WindowsConsoleCallback") OR (component STREQUAL "WindowsDebugger") OR (component STREQUAL "WindowsDebuggerCallback") OR (component STREQUAL "WindowsEventLog") OR (component STREQUAL "WindowsMessageBox") OR (component STREQUAL "WindowsSyslog") OR (component STREQUAL "WindowsSyslogCallback"))
message(STATUS "Pantheios: Setting BackEnd to ${component}")
string(TOLOWER ${component} _low_comp)
set(PANTHEIOS_BACKEND ${_low_comp})
# FrontEnds
elseif (component STREQUAL "NoFrontEnd")
message(STATUS "Pantheios: Setting FrontEnd to NoFrontEnd")
set(PANTHEIOS_FRONTEND "null")
elseif (component STREQUAL "SimpleFrontEnd")
message(STATUS "Pantheios: Setting FrontEnd to SimpleFrontEnd")
set(PANTHEIOS_FRONTEND "simple")
else ()
message(FATAL_ERROR "Unknown Component: ${component}")
endif ()
endforeach(component)
endif ()
endif(Pantheios_FIND_COMPONENTS)
if (PANTHEIOS_USE_DYNAMIC_RUNTIME)
set(PANTHEIOS_LIB_LINKTYPE "dll")
else ()
set(PANTHEIOS_LIB_LINKTYPE "mt")
endif ()
if(PANTHEIOS_INCLUDE_DIR)
if (NOT PANTHEIOS_ROOT)
get_filename_component(PANTHEIOS_ROOT "${PANTHEIOS_INCLUDE_DIR}" PATH)
endif()
get_filename_component(PANTHEIOS_ROOT_HINT "${PANTHEIOS_INCLUDE_DIR}" PATH)
endif()
find_path(PANTHEIOS_INCLUDE_DIR pantheios/pantheios.h
PATH_SUFFIXES include
HINTS ${PANTHEIOS_ROOT} ${PANTHEIOS_ROOT_HINT}
ENV PANTHEIOS_ROOT
)
# No idea what the stuff for ICC et. al. is, so I don't handle it here...
set(_P_COMP_TAG)
set(_P_OS_TAG)
set(_P_ARCH_TAG)
if(MSVC)
if(MSVC60)
set(_P_COMP_TAG vc6)
elseif(MSVC70)
set(_P_COMP_TAG vc7)
elseif(MSVC71)
set(_P_COMP_TAG vc71)
elseif(MSVC80)
set(_P_COMP_TAG vc8)
if(CMAKE_SIZEOF_VOID_P EQUAL 8)
set(_P_ARCH_TAG .x64)
endif()
elseif(MSVC90)
set(_P_COMP_TAG vc9)
if(CMAKE_SIZEOF_VOID_P EQUAL 8)
set(_P_ARCH_TAG .x64)
endif()
elseif(MSVC10)
set(_P_COMP_TAG vc10)
if(CMAKE_SIZEOF_VOID_P EQUAL 8)
set(_P_ARCH_TAG .x64)
endif()
endif()
elseif(CMAKE_COMPILER_IS_GNUCC)
execute_process(COMMAND ${CMAKE_C_COMPILER} -dumpversion OUTPUT_VARIABLE GCC_VERSION)
string(REGEX MATCHALL "[0-9]+" GCC_VERSION_COMPONENTS ${GCC_VERSION})
list(GET GCC_VERSION_COMPONENTS 0 GCC_MAJOR)
list(GET GCC_VERSION_COMPONENTS 1 GCC_MINOR)
set(_P_COMP_TAG gcc${GCC_MAJOR}${GCC_MINOR})
if(CMAKE_SIZEOF_VOID_P EQUAL 8)
set(_P_ARCH_TAG .file64bit)
endif()
else()
message(FATAL_ERROR "Pantheios: Your compiler/environment is currently unsupported.")
endif()
set(_P_LIB_TAG ${_P_COMP_TAG}${_P_OS_TAG}${_P_ARCH_TAG})
# Is this the right way?
set(PANTHEIOS_INCLUDE_DIRS ${PANTHEIOS_INCLUDE_DIR})
set(_P_REQUIRED_LIBVARS)
set(PANTHEIOS_LIBRARIES)
set(PANTHEIOS_LIBRARIES_DEBUG)
set(PANTHEIOS_LIBRARIES_RELEASE)
# core and util libraries
foreach(l core util)
find_library(PANTHEIOS_${l}_${PANTHEIOS_LIB_LINKTYPE}_DEBUG_LIBRARY
pantheios.1.${l}.${_P_LIB_TAG}.${PANTHEIOS_LIB_LINKTYPE}.debug
PATH_SUFFIXES lib
HINTS ${PANTHEIOS_ROOT_HINT} ${PANTHEIOS_ROOT}
ENV PANTHEIOS_ROOT
)
find_library(PANTHEIOS_${l}_${PANTHEIOS_LIB_LINKTYPE}_LIBRARY
pantheios.1.${l}.${_P_LIB_TAG}.${PANTHEIOS_LIB_LINKTYPE}
PATH_SUFFIXES lib
HINTS ${PANTHEIOS_ROOT_HINT} ${PANTHEIOS_ROOT}
ENV PANTHEIOS_ROOT
)
list(APPEND _P_REQUIRED_LIBVARS
PANTHEIOS_${l}_${PANTHEIOS_LIB_LINKTYPE}_DEBUG_LIBRARY
PANTHEIOS_${l}_${PANTHEIOS_LIB_LINKTYPE}_LIBRARY
)
list(APPEND PANTHEIOS_LIBRARIES
debug ${PANTHEIOS_${l}_${PANTHEIOS_LIB_LINKTYPE}_DEBUG_LIBRARY}
optimized ${PANTHEIOS_${l}_${PANTHEIOS_LIB_LINKTYPE}_LIBRARY}
)
endforeach()
# set PANTHEIOS_LIBRARY_DIRS
get_filename_component(PANTHEIOS_LIBRARY_DIRS ${PANTHEIOS_core_${PANTHEIOS_LIB_LINKTYPE}_LIBRARY} PATH)
# backend libraries (split, sole, local, remote and common)
set(_P_LT ${PANTHEIOS_LIB_LINKTYPE})
set(_P_BE ${PANTHEIOS_BACKEND})
find_library(PANTHEIOS_be_${_P_BE}_${_P_LT}_DEBUG_LIBRARY
pantheios.1.be.${_P_BE}.${_P_LIB_TAG}.${_P_LT}.debug
PATH_SUFFIXES lib
HINTS ${PANTHEIOS_ROOT_HINT} ${PANTHEIOS_ROOT}
ENV PANTHEIOS_ROOT
)
find_library(PANTHEIOS_be_${_P_BE}_${_P_LT}_LIBRARY
pantheios.1.be.${_P_BE}.${_P_LIB_TAG}.${_P_LT}
PATH_SUFFIXES lib
HINTS ${PANTHEIOS_ROOT_HINT} ${PANTHEIOS_ROOT}
ENV PANTHEIOS_ROOT
)
list(APPEND _P_REQUIRED_LIBVARS
PANTHEIOS_be_${_P_BE}_${_P_LT}_DEBUG_LIBRARY
PANTHEIOS_be_${_P_BE}_${_P_LT}_LIBRARY
)
list(APPEND PANTHEIOS_LIBRARIES
debug ${PANTHEIOS_be_${_P_BE}_${_P_LT}_DEBUG_LIBRARY}
optimized ${PANTHEIOS_be_${_P_BE}_${_P_LT}_LIBRARY}
)
if (_P_BE STREQUAL N)
# N Backend, go through list
message(STATUS "Pantheios: Dbg: Lib-n")
foreach (blib PANTHEIOS_BACKEND_LIST)
find_library(PANTHEIOS_bec_${blib}_${_P_LT}_DEBUG_LIBRARY
pantheios.1.bec.${blib}.${_P_LIB_TAG}.${_P_LT}.debug
PATH_SUFFIXES lib
HINTS ${PANTHEIOS_ROOT_HINT} ${PANTHEIOS_ROOT}
ENV PANTHEIOS_ROOT
)
find_library(PANTHEIOS_bec_${blib}_${_P_LT}_LIBRARY
pantheios.1.bec.${blib}.${_P_LIB_TAG}.${_P_LT}
PATH_SUFFIXES lib
HINTS ${PANTHEIOS_ROOT_HINT} ${PANTHEIOS_ROOT}
ENV PANTHEIOS_ROOT
)
list(APPEND _P_REQUIRED_LIBVARS
PANTHEIOS_bec_${blib}_${_P_LT}_DEBUG_LIBRARY
PANTHEIOS_bec_${blib}_${_P_LT}_LIBRARY
)
list(APPEND PANTHEIOS_LIBRARIES
debug ${PANTHEIOS_bec_${blib}_${_P_LT}_DEBUG_LIBRARY}
optimized ${PANTHEIOS_bec_${blib}_${_P_LT}_LIBRARY}
)
endforeach()
elseif (_P_BE STREQUAL lrsplit)
# LRSplit
message(STATUS "Pantheios: Dbg: Lib-lrsplit")
# Left side
foreach (t bec bel)
find_library(PANTHEIOS_${t}_${PANTHEIOS_BACKEND_L}_${_P_LT}_DEBUG_LIBRARY
pantheios.1.${t}.${PANTHEIOS_BACKEND_L}.${_P_LIB_TAG}.${_P_LT}.debug
PATH_SUFFIXES lib
HINTS ${PANTHEIOS_ROOT_HINT} ${PANTHEIOS_ROOT}
ENV PANTHEIOS_ROOT
)
find_library(PANTHEIOS_${t}_${PANTHEIOS_BACKEND_L}_${_P_LT}_LIBRARY
pantheios.1.${t}.${PANTHEIOS_BACKEND_L}.${_P_LIB_TAG}.${_P_LT}
PATH_SUFFIXES lib
HINTS ${PANTHEIOS_ROOT_HINT} ${PANTHEIOS_ROOT}
ENV PANTHEIOS_ROOT
)
list(APPEND _P_REQUIRED_LIBVARS
PANTHEIOS_${t}_${PANTHEIOS_BACKEND_L}_${_P_LT}_DEBUG_LIBRARY
PANTHEIOS_${t}_${PANTHEIOS_BACKEND_L}_${_P_LT}_LIBRARY
)
list(APPEND PANTHEIOS_LIBRARIES
debug ${PANTHEIOS_${t}_${PANTHEIOS_BACKEND_L}_${_P_LT}_DEBUG_LIBRARY}
optimized ${PANTHEIOS_${t}_${PANTHEIOS_BACKEND_L}_${_P_LT}_LIBRARY}
)
endforeach()
# Right side
foreach (t bec ber)
find_library(PANTHEIOS_${t}_${PANTHEIOS_BACKEND_R}_${_P_LT}_DEBUG_LIBRARY
pantheios.1.${t}.${PANTHEIOS_BACKEND_R}.${_P_LIB_TAG}.${_P_LT}.debug
PATH_SUFFIXES lib
HINTS ${PANTHEIOS_ROOT_HINT} ${PANTHEIOS_ROOT}
ENV PANTHEIOS_ROOT
)
find_library(PANTHEIOS_${t}_${PANTHEIOS_BACKEND_R}_${_P_LT}_LIBRARY
pantheios.1.${t}.${PANTHEIOS_BACKEND_R}.${_P_LIB_TAG}.${_P_LT}
PATH_SUFFIXES lib
HINTS ${PANTHEIOS_ROOT_HINT} ${PANTHEIOS_ROOT}
ENV PANTHEIOS_ROOT
)
list(APPEND _P_REQUIRED_LIBVARS
PANTHEIOS_${t}_${PANTHEIOS_BACKEND_R}_${_P_LT}_DEBUG_LIBRARY
PANTHEIOS_${t}_${PANTHEIOS_BACKEND_R}_${_P_LT}_LIBRARY
)
list(APPEND PANTHEIOS_LIBRARIES
debug ${PANTHEIOS_${t}_${PANTHEIOS_BACKEND_R}_${_P_LT}_DEBUG_LIBRARY}
optimized ${PANTHEIOS_${t}_${PANTHEIOS_BACKEND_R}_${_P_LT}_LIBRARY}
)
endforeach()
else ()
# normal
message(STATUS "Pantheios: Dbg: Lib-normal")
foreach (t bec)
find_library(PANTHEIOS_${t}_${PANTHEIOS_BACKEND}_${_P_LT}_DEBUG_LIBRARY
pantheios.1.${t}.${PANTHEIOS_BACKEND}.${_P_LIB_TAG}.${_P_LT}.debug
PATH_SUFFIXES lib
HINTS ${PANTHEIOS_ROOT_HINT} ${PANTHEIOS_ROOT}
ENV PANTHEIOS_ROOT
)
find_library(PANTHEIOS_${t}_${PANTHEIOS_BACKEND}_${_P_LT}_LIBRARY
pantheios.1.${t}.${PANTHEIOS_BACKEND}.${_P_LIB_TAG}.${_P_LT}
PATH_SUFFIXES lib
HINTS ${PANTHEIOS_ROOT_HINT} ${PANTHEIOS_ROOT}
ENV PANTHEIOS_ROOT
)
list(APPEND _P_REQUIRED_LIBVARS
PANTHEIOS_${t}_${PANTHEIOS_BACKEND}_${_P_LT}_DEBUG_LIBRARY
PANTHEIOS_${t}_${PANTHEIOS_BACKEND}_${_P_LT}_LIBRARY
)
list(APPEND PANTHEIOS_LIBRARIES
debug ${PANTHEIOS_${t}_${PANTHEIOS_BACKEND}_${_P_LT}_DEBUG_LIBRARY}
optimized ${PANTHEIOS_${t}_${PANTHEIOS_BACKEND}_${_P_LT}_LIBRARY}
)
endforeach()
endif()
# frontent libraries
set(PANTHEIOS_fe_DEBUG_LIBRARY)
set(PANTHEIOS_fe_LIBRARY)
if(NOT PANTHEIOS_FRONTENT STREQUAL null)
set(_P_FE ${PANTHEIOS_FRONTEND})
find_library(PANTHEIOS_${_P_FE}_${_P_LT}_DEBUG_LIBRARY
pantheios.1.fe.${_P_FE}.${_P_LIB_TAG}.${_P_LT}.debug
PATH_SUFFIXES lib
HINTS ${PANTHEIOS_ROOT_HINT} ${PANTHEIOS_ROOT}
ENV PANTHEIOS_ROOT
)
find_library(PANTHEIOS_${_P_FE}_${_P_LT}_LIBRARY
pantheios.1.fe.${_P_FE}.${_P_LIB_TAG}.${_P_LT}
PATH_SUFFIXES lib
HINTS ${PANTHEIOS_ROOT_HINT} ${PANTHEIOS_ROOT}
ENV PANTHEIOS_ROOT
)
list(APPEND _P_REQUIRED_LIBVARS
PANTHEIOS_${_P_FE}_${_P_LT}_DEBUG_LIBRARY
PANTHEIOS_${_P_FE}_${_P_LT}_LIBRARY
)
list(APPEND PANTHEIOS_LIBRARIES
debug ${PANTHEIOS_${_P_FE}_${_P_LT}_DEBUG_LIBRARY}
optimized ${PANTHEIOS_${_P_FE}_${_P_LT}_LIBRARY}
)
endif()
# copy to NAME_LIBS
set(PANTHEIOS_LIBS ${PANTHEIOS_LIBRARIES})
# handle the QUIETLY and REQUIRED arguments and set Pantheios_FOUND to TRUE if
# all listed variables are TRUE
include(FindPackageHandleStandardArgs)
FIND_PACKAGE_HANDLE_STANDARD_ARGS(Pantheios
REQUIRED_VARS PANTHEIOS_INCLUDE_DIR ${_P_REQUIRED_LIBVARS}
)
mark_as_advanced(PANTHEIOS_INCLUDE_DIR PANTHEIOS_LIBRARIES)

56
FindSTLSoft.cmake
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@ -0,0 +1,56 @@
# Locate the STLSoft Headers.
#
# Defines the following variables:
#
# STLSOFT_FOUND - Found the Pantheios Logging Framework
# STLSOFT_INCLUDE_DIRS - Include directories
#
# Accepts the following variables as input:
#
# STLSOFT_ROOT - (as a CMake or environment variable)
# The root directory of the STLSoft install prefix
#
#
#=============================================================================
# Copyright 2012 Philipp Berger <admin@philippberger.de>
#
# Distributed under the OSI-approved BSD License (the "License");
# see accompanying file Copyright.txt for details.
#
# This software is distributed WITHOUT ANY WARRANTY; without even the
# implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
# See the License for more information.
#=============================================================================
# (To distribute this file outside of CMake, substitute the full
# License text for the above reference.)
#
if(STLSOFT_INCLUDE_DIR)
if (NOT STLSOFT_ROOT)
get_filename_component(STLSOFT_ROOT "${STLSOFT_INCLUDE_DIR}" PATH)
endif()
get_filename_component(STLSOFT_ROOT_HINT "${STLSOFT_INCLUDE_DIR}" PATH)
endif()
find_path(STLSOFT_INCLUDE_DIR stlsoft/stlsoft.h
PATH_SUFFIXES include
HINTS ${STLSOFT_ROOT} ${STLSOFT_ROOT_HINT}
ENV STLSOFT_ROOT
)
set(STLSOFT_INCLUDE_DIRS ${STLSOFT_INCLUDE_DIR})
# handle the QUIETLY and REQUIRED arguments and set STLSOFT_FOUND to TRUE if
# all listed variables are TRUE
include(FindPackageHandleStandardArgs)
FIND_PACKAGE_HANDLE_STANDARD_ARGS(STLSoft
REQUIRED_VARS STLSOFT_INCLUDE_DIR
)
mark_as_advanced(STLSOFT_INCLUDE_DIR)

16
resources/BUILD.txt
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@ -0,0 +1,16 @@
CMake
Prerequisites:
Boost >= 1.49
Build using the Boost Build system, for x64 use "bjam address-model=64" or "bjam.exe address-model=64 --build-type=complete"
You may use --toolset to specify the compiler, for ex. msvc-10.0, intel11.1, etc
Doxygen
Set DOXYGEN_EXECUTABLE to your doxygen executable, e.g. "C:/Program Files/doxygen/bin/doxygen.exe"
GTest >= 1.6.0
Download, build using CMake
If you installed gtest to e.g. "C:/C++ Projects/gtest-1.6.0"
Set GTEST_INCLUDE_DIR to "C:/C++ Projects/gtest-1.6.0/include"
Set GTEST_LIBRARY to
Set GTEST_LIBRARY_DEBUG to
Set GTEST_MAIN_LIBRARY to
Set GTEST_MAIN_LIBRARY_DEBUG to

56
resources/GUIDELINES-Doxygen.example.h
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@ -0,0 +1,56 @@
//! A test class.
/*!
A more elaborate class description.
*/
class Test
{
public:
//! An enum.
/*! More detailed enum description. */
enum TEnum {
TVal1, /*!< Enum value TVal1. */
TVal2, /*!< Enum value TVal2. */
TVal3 /*!< Enum value TVal3. */
}
//! Enum pointer.
/*! Details. */
*enumPtr,
//! Enum variable.
/*! Details. */
enumVar;
//! A constructor.
/*!
A more elaborate description of the constructor.
*/
Test();
//! A destructor.
/*!
A more elaborate description of the destructor.
*/
~Test();
//! A normal member taking two arguments and returning an integer value.
/*!
\param a an integer argument.
\param s a constant character pointer.
\return The test results
\sa Test(), ~Test(), testMeToo() and publicVar()
*/
int testMe(int a,const char *s);
//! A pure virtual member.
/*!
\sa testMe()
\param c1 the first argument.
\param c2 the second argument.
*/
virtual void testMeToo(char c1,char c2) = 0;
//! A public variable.
/*!
Details.
*/
int publicVar;
//! A function variable.
/*!
Details.
*/
int (*handler)(int a,int b);
};

23
src/exceptions/invalid_argument.h
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@ -0,0 +1,23 @@
#ifndef MRMC_EXCEPTIONS_INVALID_ARGUMENT_H_
#define MRMC_EXCEPTIONS_INVALID_ARGUMENT_H_
#include <exception>
namespace mrmc {
namespace exceptions {
//!This exception is thrown when a parameter is invalid in this context
class invalid_argument : public std::exception
{
public:
invalid_argument() : exception("::mrmc::invalid_argument"){}
invalid_argument(const char * const s): exception(s) {}
virtual const char* what() const throw()
{ return "mrmc::invalid_argument"; }
};
} // namespace exceptions
} // namespace mrmc
#endif // MRMC_EXCEPTIONS_INVALID_ARGUMENT_H_

25
src/exceptions/invalid_state.h
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#ifndef MRMC_EXCEPTIONS_INVALID_STATE_H_
#define MRMC_EXCEPTIONS_INVALID_STATE_H_
#include <exception>
namespace mrmc {
namespace exceptions {
//!This exception is thrown when a memory request can't be
//!fulfilled.
class invalid_state : public std::exception
{
public:
invalid_state() : exception("::mrmc::invalid_state"){}
invalid_state(const char * const s): exception(s) {}
virtual const char* what() const throw()
{ return "mrmc::invalid_state"; }
};
} // namespace exceptions
} // namespace mrmc
#endif // MRMC_EXCEPTIONS_INVALID_STATE_H_

23
src/exceptions/out_of_range.h
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@ -0,0 +1,23 @@
#ifndef MRMC_EXCEPTIONS_OUT_OF_RANGE_H_
#define MRMC_EXCEPTIONS_OUT_OF_RANGE_H_
#include <exception>
namespace mrmc {
namespace exceptions {
//!This exception is thrown when a parameter is not in the range of valid values
class out_of_range : public std::exception
{
public:
out_of_range() : exception("::mrmc::out_of_range"){}
out_of_range(const char * const s): exception(s) {}
virtual const char* what() const throw()
{ return "mrmc::out_of_range"; }
};
} // namespace exceptions
} // namespace mrmc
#endif // MRMC_EXCEPTIONS_OUT_OF_RANGE_H_

41
src/mrmc-cpp.cpp
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@ -14,13 +14,52 @@
#include <iostream>
#include <pantheios/pantheios.hpp>
#include <pantheios/backends/bec.file.h>
PANTHEIOS_EXTERN_C PAN_CHAR_T const PANTHEIOS_FE_PROCESS_IDENTITY[] = "mrmc-cpp";
#include "MRMCConfig.h"
#include "src/sparse/static_sparse_matrix.h"
int main(int argc, char* argv[]) {
// Logging init
pantheios_be_file_setFilePath("log.all");
pantheios::log_INFORMATIONAL("MRMC-Cpp started.");
std::cout << "Hello, World." << std::endl;
std::cout << "This is MRMC-Cpp Version " << MRMC_CPP_VERSION_MAJOR << "." << MRMC_CPP_VERSION_MINOR << std::endl;
mrmc::sparse::StaticSparseMatrix<int> *ssm = new mrmc::sparse::StaticSparseMatrix<int>(10, 10);
ssm->initialize();
ssm->addNextValue(2, 3, 1);
ssm->addNextValue(2, 4, 2);
ssm->addNextValue(2, 5, 3);
ssm->addNextValue(2, 6, 4);
ssm->addNextValue(2, 7, 5);
ssm->addNextValue(3, 4, 6);
ssm->addNextValue(3, 5, 7);
ssm->addNextValue(3, 6, 8);
ssm->addNextValue(3, 7, 9);
ssm->addNextValue(3, 8, 10);
ssm->finalize();
int target;
for (int row = 1; row <= 10; ++row) {
for (int col = 1; col <= 10; ++col) {
if (ssm->getValue(row, col, &target)) {
printf(" T%i", target);
} else {
printf(" _%i", target);
}
}
printf("\n");
}
return 0;
}

195
src/sparse/static_sparse_matrix.h
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#ifndef MRMC_SPARSE_STATIC_SPARSE_MATRIX_H_
#define MRMC_SPARSE_STATIC_SPARSE_MATRIX_H_
#include <exception>
#include "boost/integer/integer_mask.hpp"
#include <pantheios/pantheios.hpp>
#include <pantheios/inserters/integer.hpp>
#include "src/exceptions/invalid_state.h"
#include "src/exceptions/invalid_argument.h"
#include "src/exceptions/out_of_range.h"
namespace mrmc {
namespace sparse {
//! A sparse Matrix for DTMCs with a constant number of non-zero entries on the non-diagonal fields.
/*!
The sparse matrix used for calculation on the DTMCs.
Adressing is NOT zero-based! The valid range for getValue and addNextValue is 1 to rows (first argument to constructor).
*/
template <class T>
class StaticSparseMatrix {
public:
//! Constructor
/*!
\param rows Row-Count and therefor column-count of the symetric matrix
\param non_zero_entries The exact count of entries that will be submitted through addNextValue *excluding* those on the diagonal (A_{i,j} with i = j)
*/
StaticSparseMatrix(uint_fast32_t rows, uint_fast32_t non_zero_entries) {
current_size = 0;
storage_size = 0;
row_count = rows;
non_zero_entry_count = non_zero_entries;
//initialize(rows, non_zero_entries);
}
~StaticSparseMatrix() {
if (value_storage != NULL) {
free(value_storage);
}
if (column_indications != NULL) {
free(column_indications);
}
if (row_indications != NULL) {
free(row_indications);
}
if (diagonal_storage != NULL) {
free(diagonal_storage);
}
}
//! Getter for saving matrix entry A_{row,col} to target
/*!
Getter function for the matrix.
\param row 1-based index of the requested row
\param col 1-based index of the requested column
\param target pointer to where the result will be stored
\return True iff the value was set, false otherwise. On false, 0 will be written to *target.
*/
inline bool getValue(uint_fast32_t row, uint_fast32_t col, T* const target) {
if (row == col) {
// storage is row_count + 1 large for direct access without the -1
*target = diagonal_storage[row];
return true;
}
if ((row > row_count) || (col > row_count) || (row == 0) || (col == 0)) {
throw new mrmc::exceptions::out_of_range("mrmc::StaticSparseMatrix::getValue: row or col not in 1 .. rows");
}
uint_fast32_t row_start = row_indications[row - 1];
uint_fast32_t row_end = row_indications[row];
while (row_start < row_end) {
if (column_indications[row_start] == col) {
*target = value_storage[row_start];
return true;
}
if (column_indications[row_start] > col) {
break;
}
row_start++;
}
*target = 0;
return false;
}
//! Mandatory initialization of the matrix
/*!
Mandatory initialization of the matrix, must be called before using any other member function.
*/
void initialize() {
if (row_count == 0) {
pantheios::log_ERROR("StaticSparseMatrix::initialize: Throwing invalid_argument for row_count = 0");
throw new mrmc::exceptions::invalid_argument("mrmc::StaticSparseMatrix::initialize: Matrix with 0 rows is not reasonable");
}
if (((row_count * row_count) - row_count) < non_zero_entry_count) {
pantheios::log_ERROR("StaticSparseMatrix::initialize: Throwing invalid_argument: More non-zero entries than entries in target matrix");
throw new mrmc::exceptions::invalid_argument("mrmc::StaticSparseMatrix::initialize: More non-zero entries than entries in target matrix");
}
storage_size = non_zero_entry_count;
last_row = 0;
value_storage = static_cast<T*>(calloc(storage_size, sizeof(*value_storage)));
column_indications = static_cast<uint_fast32_t*>(calloc(storage_size, sizeof(*column_indications)));
row_indications = static_cast<uint_fast32_t*>(calloc(row_count + 1, sizeof(*row_indications)));
// row_count + 1 so that access with 1-based indices can be direct without the overhead of a -1 each time
diagonal_storage = static_cast<T*>(calloc(row_count + 1, sizeof(*diagonal_storage)));
if ((value_storage == NULL) || (column_indications == NULL) || (row_indications == NULL) || (diagonal_storage == NULL)) {
pantheios::log_ERROR("StaticSparseMatrix::initialize: Throwing bad_alloc: memory allocation failed");
throw new std::bad_alloc("mrmc::StaticSparseMatrix::initialize: memory allocation failed");
}
}
//! Linear Setter for matrix entry A_{row, col} to value
/*!
Linear Setter function for matrix entry A_{row, col} to value. Must be called consecutively for each element in a row in ascending order of columns AND in ascending order of rows.
Diagonal entries may be set at any time.
*/
void addNextValue(const uint_fast32_t row, const uint_fast32_t col, const T value) {
if ((row > row_count) || (col > row_count) || (row == 0) || (col == 0)) {
pantheios::log_ERROR("StaticSparseMatrix::addNextValue: Throwing out_of_range: row or col not in 1 .. rows");
throw new mrmc::exceptions::out_of_range("mrmc::StaticSparseMatrix::addNextValue: row or col not in 1 .. rows");
}
if (row == col) {
diagonal_storage[row] = value;
} else {
if (row != last_row) {
for (uint_fast32_t i = last_row; i < row; ++i) {
row_indications[i] = current_size;
}
last_row = row;
}
value_storage[current_size] = value;
column_indications[current_size] = col;
// Increment counter for stored elements
current_size++;
}
}
void finalize() {
if (storage_size != current_size) {
pantheios::log_ERROR("StaticSparseMatrix::finalize: Throwing invalid_state: Wrong call count for addNextValue");
throw new mrmc::exceptions::invalid_state("mrmc::StaticSparseMatrix::finalize: Wrong call count for addNextValue");
}
if (last_row != row_count) {
for (uint_fast32_t i = last_row; i < row_count; ++i) {
row_indications[i] = current_size;
}
}
row_indications[row_count] = storage_size;
}
private:
uint_fast32_t storage_size;
uint_fast32_t current_size;
uint_fast32_t row_count;
uint_fast32_t non_zero_entry_count;
uint_fast32_t last_row;
/*! Array containing all non-zero values, apart from the diagonal entries */
T* value_storage;
/*! Array containing all diagonal values */
T* diagonal_storage;
/*! Array containing the column number of the corresponding value_storage entry */
uint_fast32_t* column_indications;
/*! Array containing the row boundarys of valueStorage */
uint_fast32_t* row_indications;
};
} // namespace sparse
} // namespace mrmc
#endif // MRMC_SPARSE_STATIC_SPARSE_MATRIX_H_

13
test/mrmc-tests.cpp
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@ -2,11 +2,18 @@
#include "gtest/gtest.h"
#include <pantheios/pantheios.hpp>
#include <pantheios/backends/bec.file.h>
PANTHEIOS_EXTERN_C PAN_CHAR_T const PANTHEIOS_FE_PROCESS_IDENTITY[] = "mrmc-cpp-tests";
int main(int argc, char** argv) {
std::cout << "Hello, World." << std::endl;
std::cout << "MRMC Testing" << std::endl;
// Logging init
pantheios_be_file_setFilePath("log.tests.all");
pantheios::log_INFORMATIONAL("MRMC-Cpp Test Suite started.");
std::cout << "MRMC Testing Suite" << std::endl;
testing::InitGoogleTest(&argc, argv);
return RUN_ALL_TESTS();
return RUN_ALL_TESTS();
}

103
test/sparse/static_sparse_matrix.cpp
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@ -0,0 +1,103 @@
#include "gtest/gtest.h"
#include "src/sparse/static_sparse_matrix.h"
#include "src/exceptions/invalid_argument.h"
TEST(StaticSparseMatrixTest, ZeroRowsTest) {
mrmc::sparse::StaticSparseMatrix<int> *ssm = new mrmc::sparse::StaticSparseMatrix<int>(0, 50);
ASSERT_THROW(ssm->initialize(), mrmc::exceptions::invalid_argument);
delete ssm;
}
TEST(StaticSparseMatrixTest, TooManyEntriesTest) {
mrmc::sparse::StaticSparseMatrix<int> *ssm = new mrmc::sparse::StaticSparseMatrix<int>(2, 10);
ASSERT_THROW(ssm->initialize(), mrmc::exceptions::invalid_argument);
delete ssm;
}
TEST(StaticSparseMatrixTest, addNextValueTest) {
mrmc::sparse::StaticSparseMatrix<int> *ssm = new mrmc::sparse::StaticSparseMatrix<int>(5, 1);
ASSERT_NO_THROW(ssm->initialize());
ASSERT_THROW(ssm->addNextValue(0, 1, 1), mrmc::exceptions::out_of_range);
ASSERT_THROW(ssm->addNextValue(1, 0, 1), mrmc::exceptions::out_of_range);
ASSERT_THROW(ssm->addNextValue(6, 1, 1), mrmc::exceptions::out_of_range);
ASSERT_THROW(ssm->addNextValue(1, 6, 1), mrmc::exceptions::out_of_range);
delete ssm;
}
TEST(StaticSparseMatrixTest, finalizeTest) {
mrmc::sparse::StaticSparseMatrix<int> *ssm = new mrmc::sparse::StaticSparseMatrix<int>(5, 5);
ASSERT_NO_THROW(ssm->initialize());
ASSERT_NO_THROW(ssm->addNextValue(1, 2, 1));
ASSERT_NO_THROW(ssm->addNextValue(1, 3, 1));
ASSERT_NO_THROW(ssm->addNextValue(1, 4, 1));
ASSERT_NO_THROW(ssm->addNextValue(1, 5, 1));
ASSERT_THROW(ssm->finalize(), mrmc::exceptions::invalid_state);
delete ssm;
}
TEST(StaticSparseMatrixTest, Test) {
// 25 rows, 50 non zero entries
mrmc::sparse::StaticSparseMatrix<int> *ssm = new mrmc::sparse::StaticSparseMatrix<int>(25, 50);
int values[50] = {
0, 1, 2, 3, 4, 5, 6, 7, 8, 9,
10, 11, 12, 13, 14, 15, 16, 17, 18, 19,
20, 21, 22, 23, 24, 25, 26, 27, 28, 29,
30, 31, 32, 33, 34, 35, 36, 37, 38, 39,
40, 41, 42, 43, 44, 45, 46, 47, 48, 49
};
int position_row[50] = {
2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
2, 2, 2, 2, 2, 2, 2, 2, 2, 2,
2, 2, 2, 2, /* first row empty, one full row à 25 minus the diagonal entry */
4, 4, /* one empty row, then first and last column */
13, 13, 13, 13, /* a few empty rows, middle columns */
24, 24, 24, 24, 24, 24, 24, 24, 24, 24,
24, 24, 24, 24, 24, 24, 24, 24, 24, 24 /* second to last row */
};
int position_col[50] = {
1, 3, 4, 5, 6, 7, 8, 9, 10,
11, 12, 13, 14, 15, 16, 17, 18, 19, 20,
21, 22, 23, 24, 25, /* first row empty, one full row a 25 */
1, 25, /* one empty row, then first and last column */
16, 17, 18, 19, /* a few empty rows, middle columns */
2, 3, 4, 5, 6, 7, 8, 9, 10, 11,
14, 15, 16, 17, 18, 19, 20, 21, 22, 23 /* second to last row */
};
ASSERT_NO_THROW(ssm->initialize());
for (int i = 0; i < 50; ++i) {
ASSERT_NO_THROW(ssm->addNextValue(position_row[i], position_col[i], values[i]));
}
ASSERT_NO_THROW(ssm->finalize());
int target;
for (int i = 0; i < 50; ++i) {
ASSERT_TRUE(ssm->getValue(position_row[i], position_col[i], &target));
ASSERT_EQ(values[i], target);
}
// test for a few of the empty rows
for (int row = 14; row < 24; ++row) {
for (int col = 1; col <= 25; ++col) {
target = 1;
ASSERT_FALSE(ssm->getValue(row, col, &target));
ASSERT_EQ(0, target);
}
}
delete ssm;
}
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